Overlapping seabed images collected at Looe Key, Florida, 2021

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Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: Gerald A. Hatcher
Originator: Christine J. Kranenburg
Originator: Jonathan A. Warrick
Publication_Date: 20221005
Title: Overlapping seabed images collected at Looe Key, Florida, 2021
Geospatial_Data_Presentation_Form: TIFF
Series_Information:
Series_Name: data release
Issue_Identification: DOI:10.5066/P9WSF09G
Publication_Information:
Publication_Place: Santa Cruz, California
Publisher:
U.S. Geological Survey - Pacific Coastal and Marine Science Center
Online_Linkage: https://doi.org/10.5066/P9WSF09G
Larger_Work_Citation:
Citation_Information:
Originator: Gerald A. Hatcher
Originator: Christine J. Kranenburg
Originator: Jonathan A. Warrick
Originator: Stephen T. Bosse
Originator: David G. Zawada
Originator: Kimberly K. Yates
Originator: Selena A. Johnson
Publication_Date: 2022
Title:
Overlapping seabed images and location data acquired using the SQUID-5 system at Looe Key, Florida, in July 2021, with derived point cloud, digital elevation model and orthomosaic of submerged topography
Series_Information:
Series_Name: data release
Issue_Identification: DOI:10.5066/P9WSF09G
Publication_Information:
Publication_Place: Santa Cruz, California
Publisher:
U.S. Geological Survey - Pacific Coastal and Marine Science Center
Online_Linkage: https://doi.org/10.5066/P9WSF09G
Description:
Abstract:
A total of 94,567 underwater images were collected at Looe Key, Florida, in July 2021, using the SQUID5 Structure-from-Motion (SfM) system, a towed-surface vehicle with five downward-looking underwater cameras developed by the U.S. Geological Survey. The images are organized in zipped files grouped by survey line. The SQUID-5 records images in the Tagged Image File Format format to maintain the highest resolution and bit depth. Each image includes Exchangeable Image File (EXIF) metadata, containing Global navigation satellite system (GNSS) date, time, latitude, longitude, and altitude of the GNSS antenna mounted on the towed surface vehicle, copyright, keywords, and other fields.
Purpose:
The underwater images and associated location data were collected to provide high-resolution elevation data and precisely co-registered, full-color orthomosaic base maps for use in environmental assessment and monitoring of the coral reef and surrounding seafloor habitat. Additionally, the data were collected to evaluate their potential to improve USGS scientific efforts including seafloor elevation and stability modeling, and small-scale hydrodynamic flow modeling.
Supplemental_Information:
Additional information about the field activities from which these data were derived is available online at: https://cmgds.marine.usgs.gov/fan_info.php?fan=2021-633-FA and https://cmgds.marine.usgs.gov/fan_info.php?fan=2021-301-FA Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 20210715
Ending_Date: 20210719
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Bounding_Coordinates:
West_Bounding_Coordinate: -81.4089893
East_Bounding_Coordinate: -81.4019610
North_Bounding_Coordinate: 24.5473158
South_Bounding_Coordinate: 24.5445037
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:5feb3542-fa76-4c14-ba15-4f35cf8929ad
Theme:
Theme_Keyword_Thesaurus: Marine Realms Information Bank (MRIB) keywords
Theme_Keyword: seabed
Theme_Keyword: coral reefs
Theme:
Theme_Keyword_Thesaurus: Data Categories for Marine Planning
Theme_Keyword: Physical Habitats and Geomorphology
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: oceans
Theme_Keyword: elevation
Theme:
Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: reef ecosystems
Theme_Keyword: geospatial datasets
Theme_Keyword: remote sensing
Theme_Keyword: visible light imaging
Theme_Keyword: structure from motion
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: U.S. Geological Survey
Theme_Keyword: USGS
Theme_Keyword: Coastal and Marine Hazards and Resources Program
Theme_Keyword: CMHRP
Theme_Keyword: Pacific Coastal and Marine Science Center
Theme_Keyword: PCMSC
Theme_Keyword: St. Petersburg Coastal and Marine Science Center
Theme_Keyword: SPCMSC
Place:
Place_Keyword_Thesaurus: Geographic Names Information System (GNIS)
Place_Keyword: Looe Key
Place_Keyword: State of Florida
Access_Constraints: None
Use_Constraints:
USGS-authored or produced data and information are in the public domain from the U.S. Government and are freely redistributable with proper metadata and source attribution. Please recognize and acknowledge the U.S. Geological Survey as the originator of the dataset and in products derived from these data. This information is not intended for navigation purposes.
Point_of_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization:
U.S. Geological Survey, Pacific Coastal and Marine Science Center
Contact_Person: PCMSC Science Data Coordinator
Contact_Address:
Address_Type: mailing and physical
Address: 2885 Mission Street
City: Santa Cruz
State_or_Province: CA
Postal_Code: 95060
Contact_Voice_Telephone: 831-460-4747
Contact_Electronic_Mail_Address: pcmsc_data@usgs.gov
Browse_Graphic:
Browse_Graphic_File_Name: CAM13-20210717163118_000-330-fullrez-dh.jpg
Browse_Graphic_File_Description: Example of underwater image from one of the cameras.
Browse_Graphic_File_Type: JPG
Data_Set_Credit:
Data collection was funded by the U.S. Geological Survey Pacific Coastal Marine Science Center and the U.S. Geological Survey Saint Petersburg Coastal and Marine Science Center. The authors would like to thank Dr. Jason Spadaro, Assistant Professor, Marine Science and Technology, College of the Florida Keys for installing calibration targets on the reef, Lisa Symons, Regional Response Coordinator, and the staff of the Eastern Region, Office of National Marine Sanctuaries, NOAA Florida Keys National Marine Sanctuary, for coordination efforts.
Native_Data_Set_Environment: Microsoft Windows 10
Cross_Reference:
Citation_Information:
Originator: Gerald A. Hatcher
Originator: Jonathan A. Warrick
Originator: Andrew C. Ritchie
Originator: Evan T. Dailey
Originator: David G. Zawada
Originator: Christine Kranenburg
Originator: Kimberly K. Yates
Publication_Date: 2020
Title:
Accurate bathymetric maps from underwater digital imagery without ground control
Other_Citation_Details:
Hatcher, G.A., Warrick, J.A., Ritchie, A.C., Dailey, E.T., Zawada, D.G., Kranenburg, C., and Yates, K.K., 2020, Accurate bathymetric maps from underwater digital imagery without ground control: Frontiers in Marine Science, v. 7, art. 525, doi:10.3389/fmars.2020.00525
Online_Linkage: https://doi.org/10.3389/fmars.2020.00525
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report:
The accuracy of the position data used for SfM data processing is based on the accuracy of the post-processed GNSS navigation data, which produced a 10-Hz vehicle trajectory with an estimated 2-sigma accuracy of 10 cm horizontal and 15 cm vertical. Note that the accuracy of the positions in the image EXIF headers are GNSS antenna positions and are limited to six decimal places, whereas the positions in the accompanying navigation file (SQUID5_LKR_2021_Image_Locations.txt) are accurate to ten decimal places and are therefore highly recommended for use in SfM processing to produce the highest quality derived products.
Logical_Consistency_Report: All data fall within expected ranges.
Completeness_Report:
One of the five SQUID-5 cameras suffered a focusing problem from the beginning of the survey. The images from that camera (CAM30) were discarded and all derived products were constructed using images from the remaining 4 cameras. Users are advised to read the rest of the metadata record carefully for additional details.
Positional_Accuracy:
Horizontal_Positional_Accuracy:
Horizontal_Positional_Accuracy_Report:
Positions provided in the accompanying navigation file (SQUID5_LKR_2021_Image_Locations.txt) have an estimated 2-sigma horizontal accuracy of 10 cm. The accuracy of the positions in the image EXIF headers are reduced due to field size limitations for storing latitude/longitude.
Vertical_Positional_Accuracy:
Vertical_Positional_Accuracy_Report:
Positions provided in the accompanying navigation file (SQUID5_LKR_2021_Image_Locations.txt) have an estimated 2-sigma vertical accuracy of 15 cm.
Lineage:
Process_Step:
Process_Description:
IMAGE ACQUISITION Images were collected in tiff (.tif) format in synchronized quintets by the SQUID-5 system while towed at a speed of approximately 3 knots behind the USGS vessel R/V Sallenger during USGS field activity 2021-633-FA, also known as 2021-301-FA. The image-collection frequency was 1 Hz, and GNSS positions were recorded at 10 Hz. Image-gain settings were adjusted as needed depending on water depth and lighting conditions. Aperture and shutter speed were consistent for each group of images at a study site. Image files were named programmatically with the last two digits of the camera's serial number, a 14-digit UTC datetime value formatted as yyyymmddhhmmss, thousandths of seconds, and the sequential image number for that camera. For example, 'CAM13-20210717163118_000-330.tif' indicates camera 13, July 17, 2021, 16:31:18.000 (UTC), collection event number 330 of the survey line.
Process_Date: 20210719
Source_Produced_Citation_Abbreviation: raw images
Process_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey
Contact_Person: Gerald Hatcher
Contact_Position: Ocean Engineer
Contact_Address:
Address_Type: Mailing and Physical
Address: 2831 Mission Street
City: Santa Cruz
State_or_Province: CA
Postal_Code: 95060
Contact_Voice_Telephone: 831-460-7524
Contact_Facsimile_Telephone: 831-421-9209
Contact_Electronic_Mail_Address: ghatcher@usgs.gov
Process_Step:
Process_Description:
SQUID-5 NAVIGATION PROCESSING Raw GNSS data received by the antenna mounted atop the SQUID-5 were recorded at 10 Hz by a dual-frequency survey-grade GNSS receiver, which was post-processed and differentially corrected against a local base station located 14 km from the survey site, in Novatel's GrafNav software (v. 8.80.2720; https://novatel.com/products/waypoint-post-processing-software/grafnav) to produce 10-Hz SQUID-5 trajectories. The SQUID-5 trajectories, in combination with precisely recorded image capture event times, are used to generate SQUID-5 GNSS antenna positions at the moment of each image capture in the accompanying navigation file (SQUID5_LKR_2021_Image_Locations.txt). The positions in the SQUID-5 navigation file represent the position of the SQUID-5 GNSS antenna reference point (ARP), not the position of the cameras or features imaged. To determine actual image positions, photogrammetric software such as Agisoft Metashape can be used to apply the lever arm offsets (in the camera frame of reference) from the GNSS antenna reference point to the camera lens. Using this method the following values for each camera were calculated for x,y,z in units of meters. Camera 13, 0.028 m(x), 0.016 m(y), 0.822 m(z); Camera 39, 0.274 m(x), -0.106 m(y), 0.912 m(z); Camera 75, 0.128 m(x), 0.562 m(y), 0.741 m(z); Camera 82, -0.015 m(x), -0.570 m(y), 0.765 m(z).
Process_Date: 20211110
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Christine J. Kranenburg
Contact_Organization:
U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center
Contact_Position: Cartographer
Contact_Address:
Address_Type: Physical and Mailing
Address: 600 4th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: USA
Contact_Voice_Telephone: 727-502-8000
Contact_Electronic_Mail_Address: ckranenburg@usgs.gov
Process_Step:
Process_Description:
IMAGE EXIF SORTING Georeferencing, copyright, and other relevant information were added to the EXIF header of each image using Phil Harvey's ExifTool (v. 11.88; https://exiftool.org/). To extract the information from the image headers using ExifTool, the following command can be used (tested with ExifTool version 11.88): exiftool -csv -f -filename -GPSDateStamp -GPSTimeStamp -GPSLongitude -GPSLatitude -GPSAltitude -n -Artist -Credit -comment -keywords -Caption -Copyright -CopyrightNotice -Caption-Abstract -ImageDescription directoryname/*.tif > out.csv The -csv flag writes the information out in a comma-delimited format. The -n option formats the latitude, longitude, and altitude as signed decimal values. Note that the altitude is referenced to the NAD83 (2011) ellipsoid and are all negative for this dataset. CAUTION: Without the -n option, the command may return the absolute value of the altitude. Images are sorted by survey line number and stored within zip files to limit the file sizes.
Process_Date: 20220729
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Christine J. Kranenburg
Contact_Organization:
U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center
Contact_Position: Cartographer
Contact_Address:
Address_Type: Physical and Mailing
Address: 600 4th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: USA
Contact_Voice_Telephone: 727-502-8000
Contact_Electronic_Mail_Address: ckranenburg@usgs.gov
Spatial_Data_Organization_Information:
Direct_Spatial_Reference_Method: Raster
Raster_Object_Information:
Raster_Object_Type: Pixel
Spatial_Reference_Information:
Horizontal_Coordinate_System_Definition:
Geographic:
Latitude_Resolution: 0.000001
Longitude_Resolution: 0.000001
Geographic_Coordinate_Units: Decimal degrees
Geodetic_Model:
Horizontal_Datum_Name: North American Datum of 1983 (2011)
Ellipsoid_Name: GRS 1980
Semi-major_Axis: 6378137.000000
Denominator_of_Flattening_Ratio: 298.257222101
Vertical_Coordinate_System_Definition:
Altitude_System_Definition:
Altitude_Datum_Name: North American Datum 1983 (2011)
Altitude_Resolution: 0.001
Altitude_Distance_Units: meters
Altitude_Encoding_Method: Attribute values
Entity_and_Attribute_Information:
Overview_Description:
Entity_and_Attribute_Overview:
SQUID-5 Imagery (Line##.zip) - Individual images are available in TIFF format and contained within zip files organized by survey lines (##). See Process_Step/IMAGE ACQUISITION for naming convention of individual images.
Entity_and_Attribute_Detail_Citation: U.S. Geological Survey
Distribution_Information:
Distributor:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey - CMGDS
Contact_Address:
Address_Type: Mailing and Physical
Address: 2885 Mission Street
City: Santa Cruz
State_or_Province: CA
Postal_Code: 95060
Contact_Voice_Telephone: 1-831-427-4747
Contact_Electronic_Mail_Address: pcmsc_data@usgs.gov
Resource_Description:
These data are available in TIFF format contained in zip files organized and named by survey line as Line##.zip, where ## represents a number in the range 01-76. Survey lines 44, 47, 71 and 72 were split into 2 and each half was designated Line##a.zip and Line##b.zip to keep download file sizes under 20 GB. The image files are named with the following convention: camera serial number, 14-digit UTC datetime value, thousandths of seconds, and sequential image number for specified camera. The TIFF image files contain EXIF metadata, including GNSS time and position data, and are included as an open-source format for preservation purposes.
Distribution_Liability:
Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: TIFF
Format_Information_Content:
The .zip files contains images in tagged image file format (.tif)
File_Decompression_Technique: PKZIP
Transfer_Size: 1074881
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Network_Address:
Network_Resource_Name: https://doi.org/10.5066/P9WSF09G
Access_Instructions:
Image data can be downloaded per survey line using the Network_Resource_Name link. File names correspond to the tracklines shown in the Overview Map on the landing page of the data release and are named according to the following convention: Line##.zip, where ## is a sequential trackline number indicating the order in which lines were collected. ## is a number in the range 01-76.
Fees: none
Metadata_Reference_Information:
Metadata_Date: 20221005
Metadata_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization:
U.S. Geological Survey, Pacific Coastal and Marine Science Center
Contact_Person: PCMSC Science Data Coordinator
Contact_Address:
Address_Type: mailing and physical
Address: 2885 Mission Street
City: Santa Cruz
State_or_Province: CA
Postal_Code: 95060
Contact_Voice_Telephone: 831-460-4747
Contact_Electronic_Mail_Address: pcmsc_data@usgs.gov
Metadata_Standard_Name: Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001-1998

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