Bathymetry data collected in 2008 offshore Tijuana River Estuary, California during USGS Field Activity S-5-08-SC

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Frequently anticipated questions:

What does this data set describe?

Title:
Bathymetry data collected in 2008 offshore Tijuana River Estuary, California during USGS Field Activity S-5-08-SC
Abstract:
These metadata describe bathymetry data collected during a 2008 SWATHPlus-M survey offshore Tijuana River Estuary, California. Data were collected and processed by the U.S. Geological Survey (USGS), Pacific Coastal and Marine Science Center (PCMSC) with fieldwork activity number S-5-08-SC. The bathymetry data are provided as GeoTIFF images in UTM, zone 11, NAD83 coordinates, vertically referenced to both NAVD88 and WGS84. A standard deviation grid is also provided.
Supplemental_Information:
Additional information about the field activity from which these data were derived is available online at:
https://cmgds.marine.usgs.gov/fan_info.php?fan=S508SC
Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government. Although this Federal Geographic Data Committee-compliant metadata file is intended to document the data set in nonproprietary form, as well as in Esri format, this metadata file may include some Esri-specific terminology.
  1. How might this data set be cited?
    Dartnell, Peter, Finlayson, David P., and Warrick, Jonathan A., 2020, Bathymetry data collected in 2008 offshore Tijuana River Estuary, California during USGS Field Activity S-5-08-SC: data release DOI:10.5066/P9Y8CDFI, U.S. Geological Survey, Pacific Coastal and Marine Science Center, Santa Cruz, California.

    Online Links:

    This is part of the following larger work.

    Dartnell, Peter, Finlayson, David P., and Warrick, Jonathan A., 2020, Bathymetry and acoustic backscatter data collected in 2008 offshore Tijuana River Estuary, California during USGS Field Activity S-5-08-SC: data release DOI:10.5066/P9Y8CDFI, U.S. Geological Survey, Pacific Coastal and Marine Science Center, Santa Cruz, CA.

    Online Links:

  2. What geographic area does the data set cover?
    West_Bounding_Coordinate: -123.179
    East_Bounding_Coordinate: -123.126
    North_Bounding_Coordinate: 32.580
    South_Bounding_Coordinate: 32.534
  3. What does it look like?
    https://cmgds.marine.usgs.gov/data-releases/media/2020/10.5066-P9Y8CDFI/5c5c3b573f2644f3945fbc1aaffdbec1/Tijuana_bathy_QV.jpg (JPEG)
    Quick view image of the Tijuana River Delta bathymetry data.
  4. Does the data set describe conditions during a particular time period?
    Beginning_Date: 28-Apr-2008
    Ending_Date: 07-May-2008
    Currentness_Reference:
    ground condition at time data were collected.
  5. What is the general form of this data set?
    Geospatial_Data_Presentation_Form: GeoTIFF
  6. How does the data set represent geographic features?
    1. How are geographic features stored in the data set?
      This is a Raster data set. It contains the following raster data types:
      • Dimensions 5202 x 4991 x 1, type Grid Cell
    2. What coordinate system is used to represent geographic features?
      Grid_Coordinate_System_Name: Universal Transverse Mercator
      Universal_Transverse_Mercator:
      UTM_Zone_Number: 11
      Transverse_Mercator:
      Scale_Factor_at_Central_Meridian: 0.9996
      Longitude_of_Central_Meridian: -117
      Latitude_of_Projection_Origin: 0.0
      False_Easting: 500000
      False_Northing: 0.0
      Planar coordinates are encoded using row and column
      Abscissae (x-coordinates) are specified to the nearest 1.0
      Ordinates (y-coordinates) are specified to the nearest 1.0
      Planar coordinates are specified in meters
      The horizontal datum used is North American Datum of 1983 (CORS96) and World Geodetic System of 1984.
      The ellipsoid used is Geodetic Reference System 80 and WGS84.
      The semi-major axis of the ellipsoid used is 6378137.
      The flattening of the ellipsoid used is 1/298.257.
      Vertical_Coordinate_System_Definition:
      Altitude_System_Definition:
      Altitude_Datum_Name:
      North American Vertical Datum 1988 (NAVD-88) and WGS84 ellipsoid
      Altitude_Resolution: 0.01
      Altitude_Distance_Units: meters
      Altitude_Encoding_Method:
      Explicit elevation coordinate included with horizontal coordinates
  7. How does the data set describe geographic features?
    value
    depth in meters relative to NAVD-88 and WGS84 ellipsoid (Source: Producer defined)
    Entity_and_Attribute_Overview:
    The complete 2008 1-m resolution grid "S-5-08-SC_bathy_navd88_utm11_1m.tif" was originally archived as a TIFF image with the following attributes. 
    Cell size = 1.0
Number of rows = 5202
Number of columns = 4991

Data type = floating point

Boundary
Xmin = 483181
Xmax = 488172
Ymin = 3599601
Ymax = 3604803

Statistics
Minimum value = -30.7
Maximum value = -3.3
Mean = -15.8
Standard deviation = 5.68

Coordinate system description
Projection  UTM
Zone  10
Datum  NAD83
Vertical Reference NAVD88
Units  meter
    The complete 2008 1-m resolution grid "S-5-08-SC_bathy_wgs84_utm11_1m.tif" was originally archived as a TIFF image with the following attributes. 
    Cell size = 1.0
Number of rows = 5202
Number of columns = 4991

Data type = floating point

Boundary
Xmin = 483181
Xmax = 488172
Ymin = 3599601
Ymax = 3604803

Statistics
Minimum value = -66.8
Maximum value = -39.4
Mean = -51.9
Standard deviation = 5.67

Coordinate system description
Projection  UTM
Zone  10
Datum  WGS84
Vertical Reference WGS84
Units  meter
    The complete 2008 1-m resolution grid "S-5-08-SC_bathy_stddev_nad83_utm11_1m.tif" was originally archived as a TIFF image with the following attributes. 
    Cell size = 1.0
Number of rows = 5202
Number of columns = 4991

Data type = floating point

Boundary
Xmin = 483181
Xmax = 488172
Ymin = 3599601
Ymax = 3604803

Statistics
Minimum value = 0
Maximum value = 6.69
Mean = 0.12
Standard deviation = 0.09

Coordinate system description
Projection  UTM
Zone  10
Datum  NAD83
Units  meter
    Entity_and_Attribute_Detail_Citation: U.S. Geological Survey

Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)
    • Peter Dartnell
    • David P. Finlayson
    • Jonathan A. Warrick
  2. Who also contributed to the data set?
  3. To whom should users address questions about the data?
    U.S. Geological Survey, Pacific Coastal and Marine Science Center
    Attn: PCMSC Science Data Coordinator
    2885 Mission Street
    Santa Cruz, CA

    831-427-4747 (voice)
    pcmsc_data@usgs.gov

Why was the data set created?

Coastal mapping was conducted as part of the Tijuana Estuary Fine Sediment Fate and Transport Demonstration Project, which was developed by a number of State of California, Federal, and private industry partners to provide information about the directions, rates, and processes of fine sediment transport at nearshore settings of California. The primary goal of the Demonstration Project was the monitoring of the transport, fate, and impacts of fine sediment from beach sediment nourishments in 2008 and 2009 near the Tijuana River Estuary, Imperial Beach, California. To achieve this goal, the USGS monitored the water, beach, and seafloor properties near the project site. The coastal mapping described in this report provided important baseline bathymetric and seafloor substrate information for the Demonstration Project and was used to develop sampling programs for the Demonstration Project. These data are intended for science researchers, students, policy makers, and the general public. These data can be used with geographic information systems or other software to identify bathymetric features. These data are not intended to be used for navigation.

How was the data set created?

  1. From what previous works were the data drawn?
  2. How were the data generated, processed, and modified?
    Date: 29-Apr-2008 (process 1 of 8)
    Sonar Data Collection - The bathymetric surveys were conducted using a 234.5 kHz SEA (Systems Engineering & Assessment Ltd) SWATHplus-M phase-differencing sidescan sonar. The sonar was pole-mounted on the 34-foot USGS mapping vessel R/V Parke Snavely, and affixed to a hull brace. Real-time kinematic (RTK) GPS position data were passed through a CodaOctopus F180 intertial measurement unit (IMU) to the sonar hardware and data collection software. Sonar heads, GPS antennae, and the IMU were surveyed in place to a common reference frame with a Geodimeter 640 Total Station. The R/V Snavely was outfitted with three networked workstations and a navigation computer for use by the captain and survey crew for data collection and initial processing.
    Date: 29-Apr-2008 (process 2 of 8)
    Geodetic Control - Geodetic control for the survey was established using a shore based Global Positioning System (GPS) base station broadcasting Real Time Kinematic (RTK) corrections to the survey vessel via UHF radio link. The base station was located at atop the Tijuana River National Estuarine Reserve Visitor Center. The base station was programmed using the NAD83 (CORS96) reference frame with an Epoch of 2002.0000. Average Opus Solution coordinates for the station are: 
    
Reference Frame: NAD83 (CORS96)
Epoch: 2002.0000
Latitude: N 32D 34' 29.10834"
Longitude: W 117D 7' 36.23523"
Ellipsoid Height: -25.765 m
Orthometric Height: 9.583 m (Geoid09)
UTM Zone 11 Northing: 3604152.632 m
UTM Zone 11 Easting: 488104.754 m

Reference Frame: WGS84 (G1150)
Epoch: 2008.3246
Latitude: N 32D 34' 29.12697"
Longitude: W 117D 7' 36.29008"
Ellipsoid Height: -26.526 m
    Date: 29-Apr-2008 (process 3 of 8)
    Vessel Position and Attitude - The R/V Snavely was equipped with a CodaOctopus F180 attitude and positioning system for the duration of the survey. The F180receives real-time kinematic (RTK) corrections directly. The RTK GPS data (2 cm error ellipse) are combined with the inertial motion measurements directly within the F180 hardware so that high-precision position and attitude corrections are fed in real-time to the sonar acquisition equipment. The NAD83 (CORS96) Epoch 2002.0000 3-dimensional reference frame was used for all data acquisition.
    Date: 29-Apr-2008 (process 4 of 8)
    Sound Velocity Measurements - Sound velocity measurements were collected continuously with an Applied Micro Systems Micro SV deployed on the transducer frame for real-time sound velocity adjustments at the transducer-water interface. The Micro SV is accurate to +/- 0.03 m/s. In addition, sound velocity profiles (SVP) were collected with an Applied Micro Systems, SvPlus 3472. This instrument provides time-of-flight sound-velocity measurements by using invar rods with a sound-velocity accuracy of about 0.06 m/s, pressure measured by a semiconductor bridge strain gauge to an accuracy of 0.15 percent (Full Scale) and temperature measured by thermistor to an accuracy of 0.05 degrees Celsius (Applied Microsystems Ltd., 2005).
    Date: 07-Dec-2011 (process 5 of 8)
    Sonar Sounding Processing - GPS data and measurements of vessel motion were combined in the F180 hardware to produce a high-precision vessel attitude packet. This packet was transmitted to the Swath Processor acquisition software in real time and combined with instantaneous sound velocity measurements at the transducer head before each ping. As many as 20 pings per second were transmitted with each ping consisting of 2,048 samples per side (port and starboard). The returned samples were projected to the seafloor using a ray-tracing algorithm working with the previously measured sound-velocity profiles in SEA Swath Processor (version 3.07.12.0). A series of statistical filters were applied to the raw samples that isolated the seafloor returns from other spurious targets in the water column. Finally, the processed data is stored line-by-line in both raw (.sxr) and processed (.sxp) trackline files. Processed (.sxp) files were further processed with SXPEGN (build 151) by David Finlayson (USGS) to remove erroneous data from the files and produce valid gain-normalized amplitude data for processing backscatter data.
    Date: 07-Dec-2011 (process 6 of 8)
    Digital Elevation Model Production - The digital elevation model (DEM) produced in this work was derived solely from the bathymetric data collected by the USGS during field activity S-5-08-SC. CARIS HIPS and SIPS (version 7.1.1 Service Pack 3) bathymetry processing software was used to clean and bin the raw bathymetry. Processed .sxp files were imported to CARIS, and a field sheet was created within CARIS to encompass the survey area. Survey lines were filtered to remove adjacent line data from nadir gaps. A CARIS Swath Angle BASE (bathymetry with associated statistical error) surface was created at 1-m resolution and the subset editor was used to clean artifacts and other unwanted soundings. The binned data were exported as an ASCII table along with calculations of the bin standard deviation (of all soundings within the 1 m x 1 m cell spacing) and the sounding density. The data was transformed from the NAD83 ellipsoid to the WGS84 (G1150) ellipsoid using a 14-point Helmert transformation using the parameterization described in Soler and Snay (2004) with the command line tool CS2CS (in inverse mode) in the Proj4 library (http://trac.osgeo.org/proj/). The parameters were calculated for an Epoch date of 2008.3246 as shown in table 3. The conversion from NAD83 (CORS96) to WGS84 (G1150)/ITRF2000 shifts the data about 0.97 m to the west, 0.68 m to the north, and 0.77 m in elevation. At the base station, the NAD83 ellipsoid height was -25.765 m and the orthometric height based on Geoid09 (National Geodetic Survey, 2009) was 9.583 m, representing a vertical offset of -35.348 m between the NAD83 ellipsoid heights and NAVD88 altitudes. This static offset was applied to the each of the soundings to convert the NAD83 (CORS96) ellipsoid elevations into NAVD88 altitudes. Finally, the ASCII data were gridded in Surfer (Version 10.3) at 1 m resolution using the IDW algorithm with a 3 m search radius and a smoothing parameter set to 0.5. This process filled small gaps in the surface and provided some minor smoothing to reduce the statistical noise inherent in interferometric bathymetry measurements. This resulting surface was converted to ESRI ASCII grid format
    Date: 19-Oct-2020 (process 7 of 8)
    Edited metadata to add keywords section with USGS persistent identifier as theme keyword. No data were changed. Person who carried out this activity:
    U.S. Geological Survey
    Attn: VeeAnn A. Cross
    Marine Geologist
    384 Woods Hole Road
    Woods Hole, MA

    508-548-8700 x2251 (voice)
    508-457-2310 (FAX)
    vatnipp@usgs.gov
    Date: 17-Mar-2021 (process 8 of 8)
    Corrected working URL links to cmgds data repository to the actual published links Person who carried out this activity:
    U.S. Geological Survey
    Attn: Susan A. Cochran
    Geologist
    2885 Mission Street
    Santa Cruz, CA

    831-460-7545 (voice)
    scochran@usgs.gov
  3. What similar or related data should the user be aware of?

How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?
    The SWATHPlus-M sonar system (234 kHz) depth accuracy reduces with horizontal range. The system has an estimated vertical depth uncertainty ranging from about 0.05 m to 0.30 m over a horizontal range of 0 to 90 m (https://www.iter-systems.com/wp-content/uploads/2020/03/ETD_2002_Bathyswath-2_Tech-info_EN.pdf). Accuracies of final products may be lower due to total propagated uncertainties of the mapping systems, which include sonar system, position and motion compensation system, and navigation, as well as data processing that includes sounding cleaning, gridding, and datum transformations.
  2. How accurate are the geographic locations?
    Uncertainty in the horizontal position of each sounding is a function of the total uncertainty propagated through each of the following component instruments: 1) base station GPS, 2) vessel GPS, 3) intertial motion unit (IMU), 4) water sound velocity model, and 5) beam spreading in the water column. Assuming no systematic errors in the measurement instruments themselves, beam spreading is the dominate source of positional uncertainty. The 1-degree sonar beam of the SWATHplus-M results in horizontal uncertainty ranging from 0.10 m at 10 m slant range, to about 0.45 m at 50 m slant range.
  3. How accurate are the heights or depths?
    After filtering the data to remove obvious outliers, the standard deviation of the remaining sounding elevations was calculated for each 1 m x 1 m cell in CARIS. The mean standard deviation for all cells in the survey is 0.12 m and 95% of the cells in the data set have a standard deviation of less than 0.30 m.
  4. Where are the gaps in the data? What is missing?
    Dataset is considered complete for the information presented, as described in the abstract. Users are advised to read the rest of the metadata record carefully for additional details.
  5. How consistent are the relationships among the observations, including topology?
    No formal logical accuracy tests were conducted

How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?
Access_Constraints: none
Use_Constraints:
USGS-authored or produced data and information are in the public domain from the U.S. Government and are freely redistributable with proper metadata and source attribution. Please recognize and acknowledge the U.S. Geological Survey as the originators of the dataset and in products derived from these data. This information is not intended for navigation purposes.
  1. Who distributes the data set? (Distributor 1 of 1)
    U.S. Geological Survey, Pacific Coastal and Marine Science Center
    2885 Mission Street
    Santa Cruz, CA

    1-888-427-4747 (voice)
    pcmsc_data@usgs.gov
  2. What's the catalog number I need to order this data set? These data are available in GeoTIFF format, including a tif world file (.tfw) and CSDGM FGDC-compliant metadata.
  3. What legal disclaimers am I supposed to read?
    Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
  4. How can I download or order the data?
  5. What hardware or software do I need in order to use the data set?
    The downloadable data file has been compressed with the "zip" command and can be unzipped with Winzip (or other tool) on Windows systems. To utilize these data, the user must have software capable of uncompressing the WinZip file and importing and viewing a GeoTIFF file.

Who wrote the metadata?

Dates:
Last modified: 17-Mar-2021
Metadata author:
U.S. Geological Survey, Pacific Coastal and Marine Science Center
Attn: PCMSC Science Data Coordinator
2885 Mission Street
Santa Cruz, CA

831-427-4747 (voice)
pcmsc_data@usgs.gov
Metadata standard:
Content Standard for Digital Geospatial Metadata (FGDC-STD-001-1998)
This page is <https://cmgds.marine.usgs.gov/catalog/pcmsc/DataReleases/CMGDS_DR_tool/DR_P9Y8CDFI/S-5-08-SC_bathymetry_utm11_1m_metadata.faq.html>
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