Jessica R. Lacy Rachel M. Allen 2017 NetCDF files data release DOI:10.5066/F7HM56MX Pacific Coastal and Marine Science Center Santa Cruz, California U.S. Geological Survey https://doi.org/10.5066/F7HM56MX https://www.sciencebase.gov/catalog/item/5882545de4b0dc04318b6d06 Jessie R. Lacy Rachel M. Allen Madeline R. Foster-Martinez Joanne C. T. Ferreira Andrea O'Neill 2017 data release DOI:10.5066/F7HM56MX Pacific Coastal and Marine Science Center Santa Cruz, California U.S. Geological Survey https://doi.org/10.5066/F7HM56MX Files contain hydrodynamic and sediment transport data for the location and deployment indicated. Time-series data of water depth, velocity, turbidity, and temperature were collected in San Pablo Bay and China Camp Marsh as part of the San Francisco Bay Marsh Sediment Experiments. Several instruments were deployed in tidal creek, marsh, mudflat, and Bay locations, gathering data on water depth, velocity, salinity/temperature, and turbidity. Deployment data are grouped by region (Bay channel (main Bay), Bay shallows, tidal creek, or marsh/mudflat/upper tidal creek). Users are advised check metadata and instrument information carefully for applicable time periods of specific data, as individual instrument deployment times vary. Data from these experiments will be used to investigate the spatial and temporal variation in suspended sediment transport at the marsh boundary in order to better inform predictions of marsh resilience, and offer more complete characterizations of sediment transport and conditions within this unique environment. Information about the data collection field activities can be found at: https://cmgds.marine.usgs.gov/fan_info.php?fan=2014-656-FA 20140918 20141201 dates of observations In work As needed -122.4930 -122.3697 38.0451 38.0060 USGS Metadata Identifier USGS:5882545de4b0dc04318b6d06 Global Change Master Directory (GCMD) WATER DEPTH WATER PRESSURE SEDIMENT TRANSPORT CURRENTS WATER TEMPERATURE WAVE HEIGHT CONDUCTIVITY SALINITY TURBIDITY TIDAL HEIGHT PRESSURE SENSORS CURRENT METERS WAVE HEIGHT GAUGES CTD USGS Thesaurus time series datasets CTD measurement marine water quality ocean waves Marine Realms Information Bank (MRIB) keywords wave observations water level measurements physical oceanography None U.S. Geological Survey USGS Coastal and Marine Geology Program CMGP Pacific Coastal and Marine Science Center PCMSC Suspended-sediment concentration Shallow-water habitat Tidal shallows ISO 19115 Topic Category inlandWaters Geographic Names Information System (GNIS) California San Pablo Bay Marin County China Camp State Park none USGS-authored or produced data and information are in the public domain from the U.S. Government and are freely redistributable with proper metadata and source attribution. Please recognize and acknowledge the U.S. Geological Survey as the originator(s) of the dataset and in products derived from these data. U.S. Geological Survey, Pacific Coastal and Marine Science Center PCMSC Science Data Coordinator mailing and physical

2885 Mission Street

Santa Cruz CA 95060 831-427-4747 pcmsc_data@usgs.gov https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC_Stations.png&allowOpen=true image showing location of deployment instrument locations for listed area PNG No formal attribute accuracy tests were conducted. No formal logical accuracy tests were conducted. Data fall within expected ranges. Dataset is considered complete for the information presented, as described in the abstract. Users are advised to read the metadata for each part of this data release carefully for additional details. Horizontal accuracy derived from GPS instrumentation is less than 1 m. The instrument height above the bed may have changed over the course of the deployment due to sinking of the frame or deposition or erosion of bed material. At many sites, the distance to bed was captured by the ADV, and is reflected by the sensor range to boundary variable brange in the netcdf. Instruments at each station are: Sontek Field and Ocean ADV, with OBS3 optical backscatter sensor and Paroscientific bursting pressure sensor, and RBR XR-420 or Concerto CTD (with Seapoint optical backscatter attached at one station), except at station M2T where only a Seabird SBE-37 CTD was deployed. Optical backscatter, which is linearly related to turbidity, is reported as voltage over the range 0-5 V. Turbidity is reported from 0-500 FNU. 20140918 Instruments were retrieved, and data were recovered from the instruments. Data were processed and accumulated into NetCDF files. During the lowest tides, some instruments were not submerged; these data remain. Pressure data from the ADVs were not adjusted from absolute pressure to hydrostatic pressure. 20141201 Data files were named with a convention that uses a 12- to 13-digit alpha-numeric code; zip files use an abridged eight-digit code. The first three characters for this dataset are for the deployment name (CHC for China Camp measurements including all measurement locations from Bay channel stations to Tidal Creek stations; abridged deployments with measurements taken only at Bay Shallows stations begin with 'SP' followed by A, B, C, or D to denote chronological occurrence). The fourth and fifth positions represent the calendar year in which the first data point in the file was taken (13, 2013; 14, 2014; 15, 2015; 16, 2016). The sixth through eighth positions represent the station identification - see the graphic at https://www.sciencebase.gov/catalog/file/get/58458e82e4b04fc80e5233b3?name=SFBayStationLocations.png (all Bay stations) for location information. Zip files use the informative character codes outlined above for positions 1-8; additional character positions provide instrumentation information for the data files only. The ninth and tenth positions are numbers representing the instrument position on the frame (01, 02 or 03), with 01 as uppermost on the frame. Next is a two- to three-character code for the instrument and data type (adv = Sontek ADV; bpr = RBR bursting pressure sensor; ctd = RBR CTD; obs = optical backscatter; lst = LISST; sct = SeaBird seacat CTD; vec = Nortek ADV; wh = RDI ADCP current data; wv = RDI ADCP wave data). Note that some instruments also include additional external sensors. There are an additional two characters for the instruments that collect data in a bursting pattern to indicate if the burst is included in the file or the statistics of the burst; this indicator is omitted if there is no bursting pattern (-b, burst; -s, statistics). Instruments that collect burst data only record the start time of each burst. The bursting time stamp can be generated from the start time, sampling frequency, and number of samples per burst (retrievable in the NetCDF file). 20170926 Extraneous text was removed from Semi-Major Axis tag. 20191125 Susan A. Cochran U.S. Geological Survey, Pacific Coastal and Marine Science Center mailing and physical

2885 Mission St.

Santa Cruz CA 95060 USA 831-460-7545 scochran@usgs.gov Edited metadata to add keywords section with USGS persistent identifier as theme keyword. No data were changed. 20201019 U.S. Geological Survey VeeAnn A. Cross Marine Geologist Mailing and Physical

384 Woods Hole Road

Woods Hole MA 02543-1598 508-548-8700 x2251 508-457-2310 vatnipp@usgs.gov Performed minor edits to the metadata to correct typos. No data were changed 20211013 U.S. Geological Survey Susan A. Cochran Geologist Mailing and Physical

2885 Mission Street

Santa Cruz CA 95060 831-460-7545 scochran@usgs.gov Point Entity point 4 0.001 0.001 Decimal degrees World Geodetic System 1984 (WGS84) WGS84 6378137.0 298.257223563 NetCDF files are self-contained and attribute information may be found in the header of the file itself. The entity and attribute information was generated by the individual and/or agency identified as the originator of the data set. Please review the rest of the metadata record for additional details and information. U.S. Geological Survey - ScienceBase Mailing and Physical

Denver Federal Center, Building 810, Mail Stop 302

Denver CO 80225 USA 1-888-275-8747 sciencebase@usgs.gov Downloadable data in NetCDF file format grouped in zip files. Within each zip file, separate NetCDF files are available for each instrument at the deployment location. The zip file and NetCDF file names consist of a multi-element alphanumeric code as defined in the Process Steps. Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty. NetCDF MATLAB R2015b Zip file contains time-series data in NetCDF format for the deployment period of 20140918-20141201 from station N1T zip archive 222.7 https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC14N1T.zip Data may be accessed and downloaded via the Internet None NetCDF MATLAB R2015b Zip file contains time-series data in NetCDF format for the deployment period of 20140918-20141201 from station N2M zip archive 0.1 https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC14N2M.zip Data may be accessed and downloaded via the Internet None NetCDF MATLAB R2015b Zip file contains time-series data in NetCDF format for the deployment period of 20140918-20141201 from station N2T zip archive 59.8 https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC14N2T.zip Data may be accessed and downloaded via the Internet None NetCDF MATLAB R2015b Zip file contains time-series data in NetCDF format for the deployment period of 20140918-20141201 from station S1T zip archive 0.1 https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC14S1T.zip Data may be accessed and downloaded via the Internet None png ArcGIS 10.4 PNG shows deployment instrument locations for listed area PNG shows deployment instrument locations for listed area 1.1 https://www.sciencebase.gov/catalog/file/get/5882545de4b0dc04318b6d06?name=SPC_Stations.png Data may be accessed and downloaded via the Internet None 20211013 U.S. Geological Survey, Pacific Coastal and Marine Science Center PCMSC Science Data Coordinator mailing and physical

2885 Mission Street

Santa Cruz CA 95060 831-427-4747 pcmsc_data@usgs.gov Content Standard for Digital Geospatial Metadata FGDC-STD-001-1998