Aerial imagery from the UAS survey of the coral reef off Waiakane, Molokai, Hawaii, 24 June 2018

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Frequently anticipated questions:


What does this data set describe?

Title:
Aerial imagery from the UAS survey of the coral reef off Waiakane, Molokai, Hawaii, 24 June 2018
Abstract:
This portion of the data release presents raw aerial imagery collected during an unoccupied aerial system (UAS) survey of the coral reef off Waiakane, Molokai, Hawaii, on 24 June 2018. The imagery was acquired using a Department of Interior-owned 3DR Solo quadcopter fitted with a Ricoh GR II digital camera featuring a global shutter. The camera was mounted in a nadir orientation using a fixed mount. Before each flight, the camera’s digital ISO, aperture, and shutter speed were adjusted for ambient light conditions. The UAS was flown on pre-programmed autonomous flight lines spaced to provide approximately 75 percent overlap between images from adjacent lines. The UAS was flown at an approximate altitude of 100 meters above ground level (AGL), resulting in a nominal ground-sample-distance (GSD) of 2.6 centimeters per pixel. The camera was triggered at 1 Hz using a built-in intervalometer. A total of five flights were conducted for the survey between 16:40 and 17:45 UTC (06:40 and 07:45 HST). Flight F01 was a reconnaissance flight, and no mapping imagery was collected. Flights F02 and F03 were conducted at an approximate altitude of 100 meters above ground level (AGL), resulting in complete coverage of the mapping area with a nominal ground-sample-distance (GSD) of approximately 2.5 centimeters per pixel. Flights F04 and F05 were conducted using the same flight lines and altitudes of F02 and F03, but the camera was fitted with a circular polarizing filter to reduced reflections and provide improved imaging of the seafloor through the water surface. After acquisition, the images were renamed to include flight number and acquisition time in the file name. The coordinates of the approximate image acquisition location were added ('geotagged') to the image metadata (EXIF) using the telemetry log from the UAS onboard single-frequency autonomous GPS. The image EXIF was also updated to include additional information related to the acquisition. Although the images were recorded in both JPG and camera raw (Adobe DNG) formats, only the JPG images are provided in this data release. The data release includes a total of 1,665 JPG images. Images from takeoff and landing sequences were not used for processing and have been omitted from the data release. The images from each flight are provided in a zip file named with the flight number. The zip files containing the imagery collected with the circular polarizing filter are named with '_CPF' to distinguish them from the files with imagery collected without a filter.
Supplemental_Information:
Additional information about the field activity from which these data were derived is available online at:
https://cmgds.marine.usgs.gov/fan_info.php?fan=2018-617-FA
Any use of trade, product, or firm names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
  1. How might this data set be cited?
    Logan, Joshua B., and Storlazzi, Curt D., 20220321, Aerial imagery from the UAS survey of the coral reef off Waiakane, Molokai, Hawaii, 24 June 2018: data release DOI:10.5066/P9XZT1FK, U.S. Geological Survey, Pacific Coastal and Marine Science Center, Santa Cruz, California.

    Online Links:

    This is part of the following larger work.

    Logan, Joshua B., and Storlazzi, Curt D., 2022, Aerial imagery and structure-from-motion-derived shallow water bathymetry from a UAS survey of the coral reef off Waiakane, Molokai, Hawaii, June 2018: data release DOI:10.5066/P9XZT1FK, U.S. Geological Survey, Pacific Coastal and Marine Science Center, Santa Cruz, CA.

    Online Links:

  2. What geographic area does the data set cover?
    West_Bounding_Coordinate: -157.15679
    East_Bounding_Coordinate: -157.15388
    North_Bounding_Coordinate: 21.09352
    South_Bounding_Coordinate: 21.08451
  3. What does it look like?
    https://www.sciencebase.gov/catalog/file/get/61957726d34eb622f69093a1?name=F3_20180624T171308Z_RB017518.JPG&allowOpen=True (JPEG)
    Example aerial image from the Waiakane UAS survey.
  4. Does the data set describe conditions during a particular time period?
    Calendar_Date: 24-Jun-2018
    Currentness_Reference:
    ground condition at time data were collected
  5. What is the general form of this data set?
    Geospatial_Data_Presentation_Form: JPEG
  6. How does the data set represent geographic features?
    1. How are geographic features stored in the data set?
      This is a Raster data set. It contains the following raster data types:
      • Dimensions 3264 x 4352, type Pixel
    2. What coordinate system is used to represent geographic features?
      Horizontal positions are specified in geographic coordinates, that is, latitude and longitude. Latitudes are given to the nearest 0.000001. Longitudes are given to the nearest 0.000001. Latitude and longitude values are specified in Decimal degrees. The horizontal datum used is D_WGS_1984.
      The ellipsoid used is WGS_1984.
      The semi-major axis of the ellipsoid used is 6378137.0.
      The flattening of the ellipsoid used is 1/298.257224.
      Vertical_Coordinate_System_Definition:
      Altitude_System_Definition:
      Altitude_Datum_Name: WGS84 Ellipsoid
      Altitude_Resolution: 0.01
      Altitude_Distance_Units: meters
      Altitude_Encoding_Method: Attribute values
  7. How does the data set describe geographic features?
    Entity_and_Attribute_Overview:
    There are no additional attributes besides the tags described in data quality section associated with these images.
    Entity_and_Attribute_Detail_Citation: USGS Field Activity 2018-617-FA

Who produced the data set?

  1. Who are the originators of the data set? (may include formal authors, digital compilers, and editors)
    • Joshua B. Logan
    • Curt D. Storlazzi
  2. Who also contributed to the data set?
  3. To whom should users address questions about the data?
    U.S. Geological Survey, Pacific Coastal and Marine Science Center
    Attn: PCMSC Science Data Coordinator
    2885 Mission Street
    Santa Cruz, CA

    831-427-4747 (voice)
    pcmsc_data@usgs.gov

Why was the data set created?

These data were collected to characterize the morphology and rugosity of the shallow fringing coral reef off Waiakane, Molokai, Hawaii, as part of a larger USGS study of nearshore circulation and hydrodynamic properties of coral reefs. The orthomosaic images can be used with geographic information systems (GIS) software for research purposes.

How was the data set created?

  1. From what previous works were the data drawn?
  2. How were the data generated, processed, and modified?
    Date: 24-Jun-2018 (process 1 of 2)
    Aerial imagery was collected using a Department of Interior-owned 3DR Solo quadcopter fitted with a Ricoh GR II digital camera featuring a global shutter. The UAS was flown on pre-programmed autonomous flight lines which were oriented roughly shore-normal and were spaced to provide approximately 75 percent overlap between images from adjacent lines, at an approximate altitude of 100 meters above ground level (AGL). The camera was triggered at 1 Hz using a built-in intervalometer. Before each flight, the camera’s digital ISO, aperture, and shutter speed were adjusted for ambient light conditions. A total of five flights were conducted for the survey between 16:40 and 17:45 UTC (06:40 and 07:45 HST). Flight F01 was a reconnaissance flight, and no mapping imagery was collected during the flight. Flights F02 and F03 were conducted at an approximate altitude of 100 meters above ground level (AGL), resulting in complete coverage of the mapping area with a nominal ground-sample-distance (GSD) of approximately 2.5 centimeters per pixel. Flights F04 and F05 were conducted using the same flight lines and altitudes of F02 and F03, but the camera was fitted with a circular polarizing filter to reduced reflections and provide improved imaging of the seafloor through the water surface. Only the images collected without the polarizing filter (F02 and F03) were used for the creation of the orthomosaic presented in this data release. Person who carried out this activity:
    Joshua Logan
    U.S. Geological Survey, Pacific Coastal and Marine Science Center
    Physical Scientist
    2885 Mission Street
    Santa Cruz, CA
    US

    831-460-7519 (voice)
    831-427-4748 (FAX)
    jlogan@usgs.gov
    Date: 2018 (process 2 of 2)
    The image files were renamed using a custom python script. The file names were formed using the following pattern Fx-YYYYMMDDThhmmssZ_Ryz.*, where: - Fx = Flight number - YYYYMMDDThhmmssZ = date and time in the ISO 8601 standard, where 'T' separates the date from the time, and 'Z' denotes UTC ('Zulu') time. - Ry = RA or RB to distinguish camera 'RicohA' from 'RicohB' - z = original image name assigned by camera during acquisition - * = file extension (JPG or DNG)
    The approximate image acquisition coordinates were added to the image metadata (EXIF) ('geotagged') using the image timestamp and the telemetry logs from the UAS onboard single-frequency 1-Hz autonomous GPS. The geotagging process was done using the GeoSetter software package. To improve timestamp accuracy, the image acquisition times were adjusted to true ('corrected') UTC time by comparing the image timestamps with several images taken of a smartphone app ('Emerald Time') showing accurate time from Network Time Protocol (NTP) servers. For this survey, + 00:00:02 (2 seconds) were added to the image timestamp to synchronize with UTC time. The positions stored in the EXIF are in geographic coordinates referenced to the WGS84(G1150) coordinate reference system (EPSG:7660), with elevation in meters relative to the WGS84 ellipsoid.
    Additional information was added to the EXIF using the command-line 'exiftool' software with the following command: exiftool ^ -P ^ -Copyright="Public Domain. Please credit U.S. Geological Survey." ^ -CopyrightNotice="Public Domain. Please credit U.S. Geological Survey." ^ -ImageDescription="Low-altitude aerial image of the shallow coral reef off Waiakane, Molokai, HI, USA, from USGS Unmanned Aircraft System (UAS) survey 2018-617-FA." ^ -Caption-Abstract="Coral reef off Waiakane, Molokai, HI, USA, from USGS survey 2018-617-FA." ^ -Caption="Aerial image of the shallow coral reef off Waiakane, Molokai, HI, USA, from USGS Unmanned Aircraft System (UAS) survey 2018-617-FA." ^ -sep ", " ^ -keywords="coral reef, Molokai, Maui County, Hawaii, Waiakane, 2018-617-FA, Unmanned Aircraft System, UAS, drone, aerial imagery, U.S. Geological Survey, USGS, Pacific Coastal and Marine Science Center" ^ -comment="Low-altitude aerial image from USGS Unmanned Aircraft System (UAS) survey 2018-617-FA." ^ -Credit="U.S. Geological Survey" ^ -Contact="pcmsc_data@usgs.gov" ^ -Artist="U.S. Geological Survey, Pacific Coastal and Marine Science Center" Person who carried out this activity:
    Joshua Logan
    U.S. Geological Survey, Pacific Coastal and Marine Science Center
    2885 Mission Street
    Santa Cruz, CA

    831-460-7519 (voice)
    jlogan@usgs.gov
  3. What similar or related data should the user be aware of?

How reliable are the data; what problems remain in the data set?

  1. How well have the observations been checked?
    The Ricoh GR II cameras used to acquire these images produce a nominal image size of 16.2 megapixels in both JPG and camera raw (Adobe DNG) image formats. The image acquisition time stamp is recorded to the image metadata (EXIF) with a precision of 1 second. The UAS onboard GPS is a single-frequency autonomous receiver which records positions to the telemetry log at 1 second intervals, with an approximate accuracy of 3 meters horizontally and 10 meters vertically. The geotagging operation uses the image time stamp to derive the image acquisition location by finding the nearest location recorded at the time of acquisition. To reduce the potential for timing errors during the geotagging process, the image time stamps were adjusted to true ('corrected') UTC time by comparing the image time stamps with several images taken of a smartphone app ('Emerald Time') showing accurate time from Network Time Protocol (NTP) servers. For this survey, + 00:00:02 (2 seconds) were added to the image time to synchronize with corrected UTC time. The adjusted time stamp was only used for geotagging; the original image time stamp was retained in the image EXIF and file name. The positions stored in the EXIF are in the WGS84 (G1150) coordinate reference system (EPSG:7660), with elevation in meters relative to the WGS84 ellipsoid.
  2. How accurate are the geographic locations?
    The horizontal positions stored in the EXIF image metadata were derived with a 'geotagging' process using the image time stamps and the uncorrected positions recorded in the telemetry log of the UAS from the onboard single-frequency autonomous GPS (mRobotics GPS u-Blox Neo-M8N / 3DR SOLO Upgrade). To reduce the potential for timing errors during the geotagging process, the image time stamps were adjusted to true ('corrected') UTC time by comparing the image time stamps with several images taken of a smartphone app ('Emerald Time') showing accurate time from Network Time Protocol (NTP) servers. The horizontal positions are estimated to be accurate to approximately 3 meters. However, it should be noted that for some images the error may exceed this estimate due to GPS errors or timing errors associated with the geotagging process.
  3. How accurate are the heights or depths?
    The vertical positions stored in the EXIF image metadata were derived with a 'geotagging' process using the image time stamps and the uncorrected positions recorded in the telemetry log of the UAS from the onboard single-frequency autonomous GPS (mRobotics GPS u-Blox Neo-M8N / 3DR SOLO Upgrade). To reduce the potential for timing errors during the geotagging process, the image time stamps were adjusted to true ('corrected') UTC time by comparing the image time stamps with several images taken of a smartphone app ('Emerald Time') showing accurate time from Network Time Protocol (NTP) servers. The horizontal positions are estimated to be accurate to approximately 10 meters. However, it should be noted that for some images the error may exceed this estimate due to GPS errors or timing errors associated with the geotagging process.
  4. Where are the gaps in the data? What is missing?
    Five flights were conducted with during the survey. Flights F01 was for reconnaissance purposes and no mapping imagery was collected. The imagery from each flight was stored separately, and the flights were renamed for organizational purposes. The camera shutter was triggered at 1 Hz by a built-in intervalometer which was started before takeoff and stopped after landing. Images from the takeoff and landing sequences were not used in data processing and are not included in this data release.
  5. How consistent are the relationships among the observations, including topology?
    Photographs were renamed using a custom python script to include flight number, image acquisition date and time in Universal Coordinated Time (UTC), camera ID, and original image ID number. The image EXIF were also updated to include additional information related to the acquisition. Some photographs may be auto-rotated by certain viewing software, but the original image orientation is the same for all images.

How can someone get a copy of the data set?

Are there legal restrictions on access or use of the data?
Access_Constraints None
Use_Constraints USGS-authored or produced data and information are in the public domain from the U.S. Government and are freely redistributable with proper metadata and source attribution. Please recognize and acknowledge the U.S. Geological Survey as the originator(s) of the dataset and in products derived from these data. This information is not intended for navigation purposes.
  1. Who distributes the data set? (Distributor 1 of 1)
    U.S. Geological Survey - ScienceBase
    Denver Federal Center, Building 810, Mail Stop 302
    Denver, CO
    United States

    1-888-275-8747 (voice)
    sciencebase@usgs.gov
  2. What's the catalog number I need to order this data set? The aerial images from four flights conducted during the UAS survey are available in JPG format. The images from each flight are combined into a zip file with the flight number in the file name.
  3. What legal disclaimers am I supposed to read?
    Unless otherwise stated, all data, metadata and related materials are considered to satisfy the quality standards relative to the purpose for which the data were collected. Although these data and associated metadata have been reviewed for accuracy and completeness and approved for release by the U.S. Geological Survey (USGS), no warranty expressed or implied is made regarding the display or utility of the data on any other system or for general or scientific purposes, nor shall the act of distribution constitute any such warranty.
  4. How can I download or order the data?
  5. What hardware or software do I need in order to use the data set?
    The downloadable data files are available in zipped JPG file format. Image processing and viewing software can be used to open and view the files.

Who wrote the metadata?

Dates:
Last modified: 21-Mar-2022
Metadata author:
U.S. Geological Survey, Pacific Coastal and Marine Science Center
Attn: PCMSC Science Data Coordinator
2885 Mission Street
Santa Cruz, CA

831-427-4747 (voice)
pcmsc_data@usgs.gov
Metadata standard:
Content Standard for Digital Geospatial Metadata (FGDC-STD-001-1998)

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