Time-series coral-cover data from Hawaii, Florida, Mo'orea, and the Virgin Islands

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Metadata:

Identification_Information:
Citation:
Citation_Information:
Originator: James R. Guest
Originator: Peter J. Edmunds
Originator: Ruth D. Gates
Originator: Ilsa B. Kuffner
Originator: Eric K. Brown
Originator: Ku'ulei S. Rodgers
Originator: Paul L. Jokiel
Originator: Robert R. Ruzicka
Originator: Michael A. Colella
Originator: Jeff Miller
Originator: Andrea Atkinson
Originator: Michael W. Feeley
Originator: Caroline S. Rogers
Publication_Date: 20180430
Title:
Time-series coral-cover data from Hawaii, Florida, Mo'orea, and the Virgin Islands
Geospatial_Data_Presentation_Form: Tabular digital data
Series_Information:
Series_Name: U.S. Geological Survey Data Release
Issue_Identification: doi:10.5066/F78W3C7W
Publication_Information:
Publication_Place: St. Petersburg, FL
Publisher: U.S. Geological Survey
Online_Linkage: https://doi.org/10.5066/F78W3C7W
Larger_Work_Citation:
Citation_Information:
Originator: James R. Guest
Originator: Peter J. Edmunds
Originator: Ruth D. Gates
Originator: Ilsa B. Kuffner
Originator: Andreas J. Andersson
Originator: Brian B. Barnes
Originator: Iliana Chollett
Originator: Robin Elahi
Originator: Travis A. Courtney
Originator: Kevin Gross
Originator: Elizabeth A. Lenz
Originator: Satoshi Mitarai
Originator: Peter J. Mumby
Originator: Hannah R. Nelson
Originator: Britt A. Parker
Originator: Hollie M. Putnam
Originator: Lauren T. Toth
Publication_Date: 20180618
Title:
A framework for identifying and characterising coral-reef "oases" against a backdrop of degradation
Publication_Information:
Publication_Place: United Kingdom
Publisher: Journal of Applied Ecology
Online_Linkage: https://doi.org/10.1111/1365-2664.13179
Description:
Abstract:
Coral reefs around the world have degraded over the last half-century as evidenced by loss of live coral cover. This ubiquitous observation led to the establishment of long-term, ecological monitoring programs in several regions with sizable coral-reef resources. As part of the U.S. Geological Survey (USGS) John Wesley Powell Center for Analysis and Synthesis working group "Local-scale ecosystem resilience amid global-scale ocean change: the coral reef example," scientists gathered resultant data from four of these programs in the main Hawaiian Islands, the Florida Keys, Mo'orea in French Polynesia, and St. John in the U.S. Virgin Islands to examine among-site, within-region spatial and temporal variation in coral cover. Data from the four focal regions represent spatial scales ranging from ~80 to 17,000 km2. The surveys chosen for the analysis were carried out at fixed sites between 1992 and 2015. Survey durations differed among focal regions and extended from 11 years at Mo'orea to 24 years at some of the sites in St. John. One hundred and twenty-three fixed sites (defined here as distinct surveys carried out within a defined reef habitat, depth range, or area of shoreline) were surveyed repeatedly (annually or every few years) in each focal region. Only sites with surveys extending over a decade or more and with at least 3 years of surveys were used so as to capture a variety of disturbance events (for example, El Niño events, major storms, etc.). Each focal region has experienced disturbances such as overfishing, disease pandemics, thermal stress, pollution, invasive species, predator outbreaks, and major storms. The data gathered for analysis are provided in this data release and are interpreted in Guest and others (2018).
Purpose:
These data were originally collected by state and federal institutions to monitor the persistence of coral reef ecosystem resources. The data were combined and analyzed as part of the of the U.S. Geological Survey (USGS) John Wesley Powell Center for Analysis and Synthesis working group "Local-scale ecosystem resilience amid global-scale ocean change: the coral reef example". These data and subsequent analyses will be used to inform resource managers and the scientific community on the long-term prognosis for coral reef health and to help guide management decisions.
Supplemental_Information:
Scientific research permits: The data included here were collected with permission from the respective government agencies responsible for marine resource management in each jurisdiction. See cross-referenced publications for permitting and methods details.
Time_Period_of_Content:
Time_Period_Information:
Range_of_Dates/Times:
Beginning_Date: 1992
Ending_Date: 2015
Currentness_Reference: ground condition
Status:
Progress: Complete
Maintenance_and_Update_Frequency: None planned
Spatial_Domain:
Bounding_Coordinates:
West_Bounding_Coordinate: -159.78
East_Bounding_Coordinate: -64.6677
North_Bounding_Coordinate: 25.295
South_Bounding_Coordinate: -17.5883
Keywords:
Theme:
Theme_Keyword_Thesaurus: USGS Metadata Identifier
Theme_Keyword: USGS:3500a75e-f9a0-4e8f-84b7-718dc4a0cb49
Theme:
Theme_Keyword_Thesaurus: USGS Thesaurus
Theme_Keyword: reef ecosystems
Theme_Keyword: coelenterates
Theme_Keyword: aquatic biology
Theme_Keyword: marine geology
Theme:
Theme_Keyword_Thesaurus: None
Theme_Keyword: coral reef
Theme_Keyword: community ecology
Theme_Keyword: coral cover
Theme:
Theme_Keyword_Thesaurus: ISO 19115 Topic Category
Theme_Keyword: environment
Theme_Keyword: geoscientificInformation
Theme_Keyword: oceans
Place:
Place_Keyword_Thesaurus: Geographic Names Information System
Place_Keyword: Dry Tortugas National Park
Place_Keyword: Florida Keys
Place_Keyword: Florida
Place_Keyword: United States of America
Place_Keyword: Hawaii
Place_Keyword: O'ahu
Place_Keyword: Maui
Place_Keyword: Kaua'i
Place_Keyword: Moloka'i
Place_Keyword: Virgin Islands National Park
Place_Keyword: United States Virgin Islands
Place_Keyword: Saint John
Place:
Place_Keyword_Thesaurus: None
Place_Keyword: Florida Keys National Marine Sanctuary
Place_Keyword: Mo'orea
Place_Keyword: French Polynesia
Stratum:
Stratum_Keyword_Thesaurus: None
Stratum_Keyword: seafloor
Temporal:
Temporal_Keyword_Thesaurus: None
Temporal_Keyword: Modern
Access_Constraints: None
Use_Constraints:
Public domain data from the U.S. Government are freely redistributable with proper metadata and source attribution. The U.S. Geological Survey requests to be acknowledged as originator of these data in future products or derivative research.
Point_of_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Ilsa B. Kuffner
Contact_Organization: Southeast Region
Contact_Address:
Address_Type: mailing and physical
Address: 600 4Th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: United States
Contact_Voice_Telephone: 727-502-8048
Contact_Electronic_Mail_Address: ikuffner@usgs.gov
Data_Set_Credit:
University of Hawaii, California State University Northridge, National Park Service, and Florida Fish and Wildlife Conservation Commission
Cross_Reference:
Citation_Information:
Originator: E. K. Brown
Originator: E. Cox
Originator: P. Jokiel
Originator: K. Rodgers
Originator: W. Smith
Originator: B. Tissot
Originator: S. L. Coles
Originator: J. Hultquist
Publication_Date: 2004
Title:
Development of benthic sampling methods for the Coral Reef Assessment and Monitoring Program (CRAMP) in Hawai'i
Publication_Information:
Publication_Place: Honolulu, HI
Publisher: Pacific Science 58(2):145-158
Cross_Reference:
Citation_Information:
Originator: P. J. Edmunds
Publication_Date: 2013
Title:
Decadal-scale changes in the community structure of coral reefs of St. John, US Virgin Islands
Publication_Information:
Publication_Place: Northridge, CA
Publisher: Marine Ecology Progress Series 489:107-123
Cross_Reference:
Citation_Information:
Originator: P. L. Jokiel
Originator: E. K. Brown
Originator: A. Friedlander
Originator: K. S. Rodgers
Originator: W. R. Smith
Publication_Date: 2004
Title:
Hawai'i Coral Reef Assessment and Monitoring Program: spatial patterns and temporal dynamics in reef coral communities
Publication_Information:
Publication_Place: Honolulu, HI
Publisher: Pacific Science 58(2):159-174
Cross_Reference:
Citation_Information:
Originator: J. Miller
Originator: E. Muller
Originator: C. Rogers
Originator: R. Waara
Originator: A. Atkinson
Originator: K. Whelan
Originator: M. Patterson
Originator: B. Witcher
Publication_Date: 2009
Title:
Coral disease following massive bleaching in 2005 causes 60% decline in coral cover on reefs in the US Virgin Islands
Publication_Information:
Publication_Place: St. John, VI
Publisher: Coral Reefs 28:925-937.
Cross_Reference:
Citation_Information:
Originator: J. Miller
Originator: C. S. Rogers
Originator: M. W. Feeley
Originator: A. J. Atkinson
Originator: A. D. Davis
Originator: M. E. Patterson
Originator: R. J. Waara
Originator: B. D. Witcher
Originator: J. M. Patterson
Originator: E. M. Muller
Publication_Date: 2017
Title:
Coral reef monitoring: Protocol narrativeÑVersion 2.0. Natural Resource Report NPS/SFCN/NRR—2017/1464
Publication_Information:
Publication_Place: Fort Collins, Colorado
Publisher: National Park Service
Online_Linkage: https://irma.nps.gov/DataStore/DownloadFile/580459
Cross_Reference:
Citation_Information:
Originator: K. S. Rodgers
Originator: P. L. Jokiel
Originator: E. K. Brown
Originator: S. Hau
Originator: R. Sparks
Publication_Date: 2015
Title:
Over a decade of change in spatial and temporal dynamics of Hawaiian coral reef communities
Publication_Information:
Publication_Place: Honolulu, HI
Publisher: Pacific Science 69(1):1-13
Cross_Reference:
Citation_Information:
Originator: C. S. Rogers
Originator: J. Miller
Publication_Date: 2006
Title:
Permanent 'phase shifts' or reversible declines in coral cover? Lack of recovery of two coral reefs in St. John, US Virgin Islands
Publication_Information:
Publication_Place: St. John, VI
Publisher: Marine Ecology Progress Series 306:103-114
Cross_Reference:
Citation_Information:
Originator: R. R. Ruzicka
Originator: M. A. Colella
Originator: J. W. Porter
Originator: J. M. Morrison
Originator: J. A. Kidney
Originator: V. Brinkhuis
Originator: K. S. Lunz
Originator: K. A. Macaulay
Originator: L. A. Bartlett
Originator: M. K. Meyers
Originator: J. Colee
Publication_Date: 2013
Title:
Temporal changes in benthic assemblages on Florida Keys reefs 11 years after the 1997/1998 El Niño
Publication_Information:
Publication_Place: St. Petersburg, FL
Publisher: Marine Ecology Progress Series 489:125-141
Cross_Reference:
Citation_Information:
Originator: T. C. Adam
Originator: R. J. Schmitt
Originator: S. J. Holbrook
Originator: A. J. Brooks
Originator: P. J. Edmunds
Originator: R. C. Carpenter
Originator: G. Bernardi
Publication_Date: 2011
Title:
Herbivory, connectivity, and ecosystem resilience: Response of a coral reef to a large-scale perturbation
Publication_Information:
Publication_Place: Northridge, CA
Publisher: PLoS ONE 6(8):e23717
Online_Linkage:
Data_Quality_Information:
Attribute_Accuracy:
Attribute_Accuracy_Report: No formal attribute accuracy tests were conducted
Logical_Consistency_Report: No formal logical accuracy tests were conducted
Completeness_Report:
Dataset is considered complete for the information presented, as described in the abstract. Users are advised to read the rest of the metadata record carefully for additional details.
Positional_Accuracy:
Horizontal_Positional_Accuracy:
Horizontal_Positional_Accuracy_Report: No formal positional accuracy tests were conducted
Vertical_Positional_Accuracy:
Vertical_Positional_Accuracy_Report: No formal positional accuracy tests were conducted
Lineage:
Process_Step:
Process_Description:
For each of the 123 sites where surveys occurred, mean percent coral cover was calculated as the average of all replicate transects, quadrats or stations (dependent on the sampling design for each monitoring program) surveyed within each year. The locations of fixed quadrats, transects, or stations within sites were randomly or haphazardly selected, except for two sites in St. John (Tektite 1 and Yawzi 1), which were selected based on high coral cover in 1987. Detailed descriptions of monitoring methods used and disturbance regimes for each focal location are presented in previous publications and on the monitoring programsÕ websites (Hawaii Coral Reef Assessment and Monitoring Program, ÒCRAMP_HawaiiÓ: Brown et al. 2004, Jokiel et al. 2004, Rodgers et al. 2015, cramp.wcc.hawaii.edu/; Florida Coral Reef Evaluation and Monitoring Project, ÒCREMP_FloridaÓ: Ruzicka et al. 2013, http://www.myfwc.com/research/habitat/coral/; Mo'orea Long Term Ecological Research Network, ÒMo'orea_LTERÓ: Adam et al. 2011, http://mcr.lternet.edu/; St. John, USVI, for data collected by National Park Service South Florida Caribbean Network, ÒNPS_SFCNÓ: Rogers & Miller 2006; Miller et al. 2009; Miller et al. 2017; http://science.nature.nps.gov/im/units/sfcn/; St. John, USVI, for data collected by California State University Northridge, ÒCSUNÓ: Edmunds 2013, and contact Peter J. Edmunds, email: peter.edmunds@csun.edu).
Process_Date: 2016
Process_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Ilsa B Kuffner
Contact_Organization: U.S. Geological Survey
Contact_Address:
Address_Type: mailing and physical
Address: 600 4Th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: United States
Contact_Voice_Telephone: 727-502-8048
Contact_Electronic_Mail_Address: ikuffner@usgs.gov
Process_Step:
Process_Description:
Added keywords section with USGS persistent identifier as theme keyword.
Process_Date: 20201013
Process_Contact:
Contact_Information:
Contact_Organization_Primary:
Contact_Organization: U.S. Geological Survey
Contact_Person: VeeAnn A. Cross
Contact_Position: Marine Geologist
Contact_Address:
Address_Type: Mailing and Physical
Address: 384 Woods Hole Road
City: Woods Hole
State_or_Province: MA
Postal_Code: 02543-1598
Contact_Voice_Telephone: 508-548-8700 x2251
Contact_Facsimile_Telephone: 508-457-2310
Contact_Electronic_Mail_Address: vatnipp@usgs.gov
Spatial_Data_Organization_Information:
Indirect_Spatial_Reference: N/A
Direct_Spatial_Reference_Method: Point
Entity_and_Attribute_Information:
Detailed_Description:
Entity_Type:
Entity_Type_Label: Coral_cover_data.csv, Coral_cover_data.xlsx
Entity_Type_Definition:
These files contain attribute information for coral-reef survey data collected at four focal locations: the main Hawaiian Islands, the Florida Keys, Mo'orea in French Polynesia, and St. John in the U.S. Virgin Islands. Data include focal location name, sub-location name, site name, site latitude, site longitude, year data collected, taxonomic identity, and percent cover of live coral. To view the data in a tab-delimited format arranged by column, please use the Excel spreadsheet.
Entity_Type_Definition_Source: USGS
Attribute:
Attribute_Label: Location
Attribute_Definition:
A textual identifier of the four locations where data were collected: "Florida_Keys" = the Florida Keys islands in the state of Florida, United States of America; "French Polynesia" = the overseas collectivity of the French Republic; "Main_Hawaiian_Islands" = the main islands of the state of Hawaii, United States of America; "USVI" = the United States Territory of the Virgin Islands, United States of America.
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Unrepresentable_Domain:
A textual description of the geographic location where data were collected.
Attribute:
Attribute_Label: Sub_location
Attribute_Definition:
A textual identifier of the region within each of the four locations where data were collected. St. John, U.S. Virgin Islands, and French Polynesia do not have more than one sub-location.
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Unrepresentable_Domain:
A textual description of the geographic sub-location where data were collected.
Attribute:
Attribute_Label: Site_name
Attribute_Definition:
A textual identifier of the site assigned by the data collectors. "Site" is defined here as the geographic area where distinct surveys were carried out within a defined reef habitat, depth range, or area of shoreline.
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Unrepresentable_Domain:
A textual description of the geographic site where data were collected.
Attribute:
Attribute_Label: Data_source
Attribute_Definition:
A textual identifier of the institutional monitoring program responsible for collecting the data. "CREMP_Florida" = Florida Coral Reef Evaluation and Monitoring Project; "Mo'orea_LTER" = Mo'orea Long Term Ecological Research Network; "CRAMP_Hawaii" = Hawaii Coral Reef Assessment and Monitoring Program; "NPS_SFCN" = National Park Service South Florida Caribbean Network; "CSUN" = California State University Northridge.
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Unrepresentable_Domain:
A textual description of the institutional program responsible for collecting the data.
Attribute:
Attribute_Label: Latitude
Attribute_Definition:
A numeric value of the angular distance of a place north (positive) or south (negative) of the earth's equator expressed in decimal degrees.
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: -17.5883
Range_Domain_Maximum: 25.2950
Attribute_Units_of_Measure: Decimal degrees
Attribute:
Attribute_Label: Longitude
Attribute_Definition:
A numeric value of the angular distance of a place east (positive) or west (negative) of the earth's prime meridian expressed in decimal degrees.
Attribute_Definition_Source: TBD
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: -159.7800
Range_Domain_Maximum: -64.6677
Attribute_Units_of_Measure: Decimal degrees
Attribute:
Attribute_Label: Year
Attribute_Definition:
A numerical value representing the calendar year in which the data were collected.
Attribute_Definition_Source: TBD
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 1992
Range_Domain_Maximum: 2015
Attribute_Units_of_Measure: N/a
Attribute:
Attribute_Label: Taxon
Attribute_Definition:
A textual identifier of the lowest taxonomic name given to the organism(s) identified in the sample (for example, genus and species, genus, family, order) as described in the World Register of Marine Species (WoRMS, http://www.marinespecies.org) or species-complex category containing only accepted species names as described in the WoRMS.
Attribute_Definition_Source: World Register of Marine Species
Attribute_Domain_Values:
Unrepresentable_Domain:
A textual identifier of the genus and species, genus, family, order as described in the WoRMS, or a species-complex category identified as follows: The Agaricia_agaricites_complex includes A. agaricites and A. humilis. The Madracis_decactis_complex includes M. decactis, M. pharensis, and M. senaria. The Mycetophyllia_lamarckiana_complex includes M. lamarckiana and M. danaana. The Orbicella_annularis_complex includes O. faveolata and O. franksi, and O. annularis. The Porites_porites_complex includes P. porites, P. furcata, and P. divaricate. The Porites_spp_Massive taxon category includes P. lobata, P. lutea and P. australiensis
Attribute:
Attribute_Label: Percent_cover
Attribute_Definition:
Percentage of the sampling unit area covered by the specified coral taxon named in column 8 (Taxon). This value is a mean value calculated by averaging replicate observations (for example, quadrats and/or transect lines) within the area defined as a site named in column 3 (Site_name).
Attribute_Definition_Source: USGS
Attribute_Domain_Values:
Range_Domain:
Range_Domain_Minimum: 0
Range_Domain_Maximum: 60.16
Distribution_Information:
Distributor:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Ilsa B Kuffner
Contact_Organization: Southeast Region
Contact_Address:
Address_Type: mailing and physical
Address: 600 4Th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: United States
Contact_Voice_Telephone: 727-502-8048
Contact_Electronic_Mail_Address: ikuffner@usgs.gov
Distribution_Liability:
This publication was prepared by an agency of the United States Government. Although these data have been processed successfully on a computer system at the U.S. Geological Survey, no warranty expressed or implied is made regarding the display or utility of the data on any other system, nor shall the act of distribution imply any such warranty. The U.S. Geological Survey shall not be held liable for improper or incorrect use of the data described and (or) contained herein. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof.
Standard_Order_Process:
Digital_Form:
Digital_Transfer_Information:
Format_Name: CSV (Comma-Separated Values)
Format_Version_Number: None
Digital_Transfer_Option:
Online_Option:
Computer_Contact_Information:
Fees: None. No fees are applicable for obtaining the dataset.
Metadata_Reference_Information:
Metadata_Date: 20201013
Metadata_Contact:
Contact_Information:
Contact_Person_Primary:
Contact_Person: Ilsa B Kuffner
Contact_Organization: Southeast Region
Contact_Position: Research Marine Biologist
Contact_Address:
Address_Type: mailing and physical
Address: 600 4Th Street South
City: St. Petersburg
State_or_Province: FL
Postal_Code: 33701
Country: United States
Contact_Voice_Telephone: 727-502-8048
Contact_Electronic_Mail_Address: ikuffner@usgs.gov
Metadata_Standard_Name: Content Standard for Digital Geospatial Metadata
Metadata_Standard_Version: FGDC-STD-001-1998

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