Overlapping seabed images and location data acquired using the SQUID-5 system at Eastern Dry Rocks coral reef, Florida, in May 2021, with derived point cloud, digital elevation model and orthomosaic of submerged topography
By Gerry A. Hatcher, Christine J. Kranenburg, Jonathan A. Warrick, Stephen T. Bosse, David G. Zawada, Kimberly K. Yates, and Selena A. Johnson
https://doi.org/10.5066/P93RIIG9
Dates
Published: June 11, 2022
Data Collected: May 7, 2021 – May 13, 2021
Summary
Underwater images were collected using a towed-surface vehicle with multiple downward-looking underwater cameras developed by the U.S. Geological Survey (USGS). The system is named the Structure-from-Motion (SfM) Quantitative Underwater Imaging Device with Five Cameras (SQUID-5).
The raw images and associated navigation data were collected at Eastern Dry Rocks, a coral reef located within the Florida Keys National Marine Sanctuary approximately seven miles southeast of Key West, Florida. The SQUID-5 surface vehicle was towed through the survey area using the 39' R/V Rachel Carson NOAA support vessel during the data collection from May 7 through 13, 2021.
The images and position data acquired by the SQUID-5 system were then processed using SfM photogrammetry techniques to generate the point clouds, bathymetric maps, and full-color orthomosaic data products presented here.
The goal of this work was to generate very high resolution (mm scale) maps and precisely co-registered full-color orthomosaic imagery of the seabed at Eastern Dry Rocks with accurate geospatial location to provide foundational maps and data for the USGS and other partners to co-register and validate their imagery and ecological data in the area. Additionally, the data were collected to evaluate their potential to fundamentally improve projects such as USGS seafloor elevation and stability modeling, and small-scale hydrodynamic flow modeling by filling a major gap in high-resolution data needed for short-term (seasonal, event-driven, small-scale) analysis.
Imagery Data
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Orthoimagery of Eastern Dry Rocks coral reef, Florida, 2021
A seabed orthoimage was developed from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system. The underwater images were processed using Structure-from-Motion (SfM) photogrammetry techniques. The orthoimage covers a rectangular area of seafloor approximately 800x160 meters (0.12 square kilometers) in size, and it was created using image-mosaicking methods and saved as a tiled, 5-mm resolution raster.
Data Files
SQUID5_EDR_2021_Orthomosaic_5mm_A_3.zip - 872.5 MB
SQUID5_EDR_2021_Orthomosaic_5mm_A_4.zip - 712.1 MB
SQUID5_EDR_2021_Orthomosaic_5mm_B_3.zip - 2.5 GB
SQUID5_EDR_2021_Orthomosaic_5mm_B_4.zip - 2.4 GB
SQUID5_EDR_2021_Orthomosaic_5mm_C_2.zip - 1.5 GB
SQUID5_EDR_2021_Orthomosaic_5mm_C_3.zip - 3.7 GB
SQUID5_EDR_2021_Orthomosaic_5mm_C_4.zip - 568.6 MB
SQUID5_EDR_2021_Orthomosaic_5mm_D_1.zip - 1.2 GB
SQUID5_EDR_2021_Orthomosaic_5mm_D_2.zip - 3.8 GB
SQUID5_EDR_2021_Orthomosaic_5mm_D_3.zip - 1.1 GB
SQUID5_EDR_2021_Orthomosaic_5mm_E_0.zip - 505.8 MB
SQUID5_EDR_2021_Orthomosaic_5mm_E_1.zip - 3.9 GB
SQUID5_EDR_2021_Orthomosaic_5mm_E_2.zip - 1.6 GB
SQUID5_EDR_2021_Orthomosaic_5mm_F_0.zip - 380.9 MB
SQUID5_EDR_2021_Orthomosaic_5mm_F_1.zip - 1.1 GB
Metadata Files
SQUID5_EDR_2021_Ortho_5mm_metadata.xml - 36.7 KB
SQUID5_EDR_2021_Ortho_5mm_metadata.txt - 36.1 KB
Support Files
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Overlapping seabed images collected at Eastern Dry Rocks coral reef, Florida, 2021
Underwater images totaling 138,733 in number were collected at Eastern Dry Rocks coral reef, near Key West, Florida, in May 2021, using the SQUID5 Structure-from-Motion (SfM) system, a towed-surface vehicle with five downward-looking underwater cameras developed by the U.S. Geological Survey. The images are organized in zipped files grouped by survey line. The SQUID-5 records images as TIFF (.tif) format to maintain the highest resolution and bit depth. Each image includes EXIF metadata, containing GNSS date, time, latitude, longitude, and altitude of the GNSS antenna mounted on the towed surface vehicle, copyright, keywords, and other fields.
Data Files
Line_01.zip - 15.3 GB
Line_02.zip - 17.0 GB
Line_03.zip - 19.2 GB
Line_04.zip - 14.9 GB
Line_05.zip - 18.5 GB
Line_06.zip - 16.4 GB
Line_07.zip - 18.5 GB
Line_08.zip - 15.0 GB
Line_09.zip - 19.5 GB
Line_10.zip - 13.6 GB
Line_11.zip - 23.4 GB
Line_12.zip - 13.6 GB
Line_13.zip - 17.7 GB
Line_14.zip - 14.9 GB
Line_15.zip - 17.7 GB
Line_16.zip - 14.7 GB
Line_17.zip - 5.8 GB
Line_18.zip - 6.4 GB
Line_19.zip - 5.3 GB
Line_20.zip - 4.3 GB
Line_21.zip - 3.6 GB
Line_22.zip - 3.1 GB
Line_23.zip - 2.9 GB
Line_24.zip - 3.8 GB
Line_25.zip - 4.2 GB
Line_26.zip - 18.5 GB
Line_27.zip - 16.6 GB
Line_28.zip - 14.4 GB
Line_29.zip - 14.1 GB
Line_30.zip - 17.8 GB
Line_31.zip - 14.6 GB
Line_32.zip - 16.1 GB
Line_33.zip - 13.0 GB
Line_34.zip - 17.5 GB
Line_35.zip - 12.2 GB
Line_36.zip - 18.6 GB
Line_37.zip - 13.2 GB
Line_38.zip - 16.1 GB
Line_39.zip - 17.7 GB
Line_40.zip - 15.2 GB
Line_41.zip - 18.8 GB
Line_42.zip - 15.1 GB
Line_43.zip - 16.7 GB
Line_44.zip - 12.1 GB
Line_45.zip - 17.7 GB
Line_46.zip - 12.2 GB
Line_47.zip - 16.4 GB
Line_48.zip - 12.7 GB
Line_49.zip - 21.5 GB
Line_50.zip - 11.8 GB
Line_51.zip - 8.7 GB
Line_52.zip - 12.8 GB
Line_53.zip - 12.8 GB
Line_54.zip - 12.6 GB
Line_55.zip - 17.4 GB
Line_56.zip - 16.7 GB
Line_57.zip - 18.2 GB
Line_58.zip - 19.1 GB
Line_59.zip - 19.0 GB
Line_60.zip - 16.0 GB
Line_61.zip - 21.2 GB
Line_62.zip - 13.2 GB
Line_63.zip - 14.9 GB
Line_64.zip - 10.2 GB
Line_65.zip - 14.5 GB
Line_66.zip - 4.9 GB
Line_67.zip - 1.1 GB
Line_68.zip - 15.4 GB
Line_69.zip - 19.2 GB
Line_70.zip - 13.2 GB
Line_71.zip - 3.4 GB
Line_72.zip - 3.3 GB
Line_73.zip - 13.1 GB
Metadata Files
SQUID5_EDR_2021_Raw_Imagery_metadata.xml - 20.0 KB
SQUID5_EDR_2021_Raw_Imagery_metadata.txt - 19.5 KB
Location-Elevation Data
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Point cloud data of Eastern Dry Rocks coral reef, Florida, 2021
A three-dimensional point cloud (LAZ format) was developed from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system and processed using Structure-from-Motion (SfM) photogrammetry techniques. Point cloud data include x,y,z positions, RGB colors, Metashape-computed confidence values, and a two-class classification ('unclassified' and 'low noise') derived from the confidence values. LAS (and its compressed form, LAZ) is an open format developed for the efficient use of point cloud lidar data. A description of the LAZ format and links to software tools for using LAZ files are provided at the USGS website: https://www.usgs.gov/news/3d-elevation-program-distributing-lidar-data-laz-format
Data Files
SQUID5_EDR_2021_PointCloud_A_3.laz - 1.3 GB
SQUID5_EDR_2021_PointCloud_A_4.laz - 925.0 MB
SQUID5_EDR_2021_PointCloud_B_3.laz - 4.6 GB
SQUID5_EDR_2021_PointCloud_B_4.laz - 4.5 GB
SQUID5_EDR_2021_PointCloud_C_2.laz - 3.7 GB
SQUID5_EDR_2021_PointCloud_C_3.laz - 6.0 GB
SQUID5_EDR_2021_PointCloud_C_4.laz - 721.6 MB
SQUID5_EDR_2021_PointCloud_D_1.laz - 2.2 GB
SQUID5_EDR_2021_PointCloud_D_2.laz - 7.4 GB
SQUID5_EDR_2021_PointCloud_D_3.laz - 1.8 GB
SQUID5_EDR_2021_PointCloud_E_0.laz - 683.5 MB
SQUID5_EDR_2021_PointCloud_E_1.laz - 6.6 GB
SQUID5_EDR_2021_PointCloud_E_2.laz - 2.8 GB
SQUID5_EDR_2021_PointCloud_F_0.laz - 419.1 MB
SQUID5_EDR_2021_PointCloud_F_1.laz - 1.5 GB
Metadata Files
SQUID5_EDR_2021_PointCloud_metadata.xml - 30.2 KB
SQUID5_EDR_2021_PointCloud_metadata.txt - 29.8 KB
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Bathymetric digital elevation model (DEM) of Eastern Dry Rocks coral reef, Florida, 2021
A digital elevation model (DEM) was created from underwater images collected at Eastern Dry Rocks coral reef near Key West, Florida, in May 2021 using the SQUID-5 camera system. The underwater images were processed using Structure-from-Motion (SfM) photogrammetry techniques into a classified two-class ('unclassified' and 'low noise') 3D point cloud. The DEM was derived in Metashape (ver. 1.6.5) from the point cloud, but it excludes the 'low noise' class. The DEM covers a rectangular area of seafloor approximately 800x160 meters (0.12 square kilometers) in size and was saved as a tiled GeoTIFF raster at 1-cm resolution.
Data Files
SQUID5_EDR_2021_DEM_1cm_A_3.zip - 200.4 MB
SQUID5_EDR_2021_DEM_1cm_A_4.zip - 132.1 MB
SQUID5_EDR_2021_DEM_1cm_B_3.zip - 616.7 MB
SQUID5_EDR_2021_DEM_1cm_B_4.zip - 526.9 MB
SQUID5_EDR_2021_DEM_1cm_C_2.zip - 387.5 MB
SQUID5_EDR_2021_DEM_1cm_C_3.zip - 867.3 MB
SQUID5_EDR_2021_DEM_1cm_C_4.zip - 76.6 MB
SQUID5_EDR_2021_DEM_1cm_D_1.zip - 310.0 MB
SQUID5_EDR_2021_DEM_1cm_D_2.zip - 917.9 MB
SQUID5_EDR_2021_DEM_1cm_D_3.zip - 210.7 MB
SQUID5_EDR_2021_DEM_1cm_E_0.zip - 111.6 MB
SQUID5_EDR_2021_DEM_1cm_E_1.zip - 903.4 MB
SQUID5_EDR_2021_DEM_1cm_E_2.zip - 276.3 MB
SQUID5_EDR_2021_DEM_1cm_F_0.zip - 63.0 MB
SQUID5_EDR_2021_DEM_1cm_F_1.zip - 171.7 MB
Metadata Files
SQUID5_EDR_2021_DEM_1cm_metadata.xml - 30.9 KB
SQUID5_EDR_2021_DEM_1cm_metadata.txt - 30.4 KB
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GNSS locations of seabed images collected at Eastern Dry Rocks coral reef, Florida, 2021
This text file (SQUID5_EDR_2021_Image_Locations.txt) provides the GNSS antenna location for underwater images collected at Eastern Dry Rocks coral reef, near Key West, Florida, in May 2021, using the SQUID5 Structure-from-Motion (SfM) system, a towed-surface vehicle with five downward-looking underwater cameras developed by the U.S. Geological Survey. The GNSS antenna location for the time of each image capture is presented with greater precision than is stored in the individual image's EXIF header due to decimal place limitations of the EXIF format.
Data Files
SQUID5_EDR_2021_Image_Locations.txt - 9.2 MB
Metadata Files
Related Field Activities
- 2021-313-FA - View Details
- 2021-620-FA - View Details
Suggested Citation
Hatcher, G.A., Kranenbug, C.J., Warrick, J.A., Bosse, S.T., Zawada, D.G., Yates, K.K., Johnson, S.A., 2022, Overlapping seabed images and location data acquired using the SQUID-5 system at Eastern Dry Rocks coral reef, Florida, in May 2021, with derived point cloud, digital elevation model and orthomosaic of submerged topography: U.S. Geological Survey data release, http://doi.org/10.5066/P93RIIG9.