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USGS Coastal and Marine Geology Program

Field Activity Details for field activity 09DCM02

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Other ID: none

Status: Completed

Organization(s): USGS, St. Petersburg Coastal and Marine Science Center

Funding Program(s):

Principal Investigator(s): Christina Kellogg

Affiliate Investigator(s):

Information Specialist(s): Christina Kellogg

Data Type(s): Biological Field Study: Experiments (biological), Biological Field Study: Surveys (biological), Sampling: Biology

Scientific Purpose/Goals: To characterize the microbial community associated with the deep-sea coral Lophelia pertusa

Vehicle(s):

Start Port/Location: Key West, FL

End Port/Location: Pensacola, FL

Start Date: 2009-08-18

End Date: 2009-09-12

Equipment Used: Kellogg Sampler

Information to be Derived: Bacterial-community species composition and presence of specific functional genes

Summary of Activity and Data Gathered: Two colonies of the deep-sea coral Lophelia pertusa were sampled from the Ewing wreck and two colonies from the Gulf Penn wreck. Coral tissue was preserved in RNAlater(r) for microbial DNA extraction in St. Petersburg.

Staff: Christina Kellogg

Affiliate Staff:

Notes: Shop Time: Kellogg used the shop to construct two milkcrate-based samplers (4 days, utilized saw, drill, hand tools). Dave Wegner drilled and shaped the container caps (~1 hour).

Location:

Gulf of Mexico

Boundaries
North: 32.66815435 South: 23.225394 West: -99.447 East: -78.97827983

Platform(s):

photo of ROV Jason
ROV Jason
photo of Ronald H. Brown
Ronald H. Brown

Publications

Kellogg, C.A., Goldsmith, D.B., 2018, Cold-water coral metagenomes (Lophelia pertusa) from the Gulf of Mexico and Atlantic Oceanâraw data: U.S. Geological Survey data release, https://doi.org/10.5066/P9AA0H3B.

Portals/Viewers

Data Acquired

Survey EquipmentSurvey InfoData Type(s)Data Collected
Kellogg Sampler --- Experiments (biological)
Surveys (biological)
Biology
Lophelia_metagenomes_raw_data_1.zip (Zip file containing raw data for CK1-CK6, and MIMS sampling metadata)
Lophelia_raw_data.zip (Zip file containing raw data (.fna, .qual, .sff) and MIMARKS metadata. )
Lophelia_metagenomes_raw_data_2.zip (Zip file containing raw data for CK7-CK12, PhiX control, and MIMS sampling metadata.)

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