Field Activity 09DCM03

Identifier 09DCM03
Purpose To characterize the microbial community associated with the deep-sea coral Lophelia pertusa
Location Gulf of Mexico
Summary See attached Excel spreadsheet, Collected 65 microbial samples (including abdominal swabs), water depth, temperature and salinity.
Info derived Bacterial-community species composition, presence of specific functional genes, identification of novel microbial species
Comments Summary of activity and data gathered are in spreadsheet: KelloggSamples09DCM03.xls
Platform
Johnson Sea-link
Seward Johnson
Length: 204 feet; Beam: 40 feet.
Itinerary
Start Key West, FL 2009-09-14
End Gulfport, MS 2009-09-24
Bounds
West -96.6345
East -77.57202983
North 31.8754986
South 22.4033774
Topic 26

Personnel

Organization
600 Fourth Street South
St. Petersburg, FL33701-4846
(727) 502-8000
Principal investigators Christina A Kellogg
Crew members
Information specialist(s)
Christina A Kellogg
Specialist, Information

Data types and categories

Data category: Biological Field Study, Sampling
Data type: Experiments (biological), Surveys (biological), Biology

Equipment and datasets

Equipment or measuring device
Kellogg Sampler
Experiments (biological), Surveys (biological), Biology
3
Lophelia_metagenomes_raw_data_1.zip(38937)
Description Zip file containing raw data for CK1-CK6, and MIMS sampling metadata
Data types
Surveys (biological)
Format comma-delimited text; FASTQ
Amount 17.5 GB
Digital location \\gs\StPetersburgFL-G\Ecosystem_and_Environmental_Studies\Archive\Publications\DR_P9AA0H3B
Public? Yes
Reviewed? Yes
Public URL https://doi.org/10.5066/P9AA0H3B
Metadata https://cmgds.marine.usgs.gov/metadata/spcmsc/Lophelia_metagenome_metadata.xml
Contact
Lophelia_metagenomes_raw_data_2.zip(38942)
Description Zip file containing raw data for CK7-CK12, PhiX control, and MIMS sampling metadata.
Data types
Surveys (biological)
Format comma-delimited text; FASTQ
Amount 10.3 GB
Digital location \\gs\StPetersburgFL-G\Ecosystem_and_Environmental_Studies\Archive\Publications\DR_P9AA0H3B
Public? Yes
Reviewed? Yes
Public URL https://doi.org/10.5066/P9AA0H3B
Metadata https://cmgds.marine.usgs.gov/metadata/spcmsc/Lophelia_metagenome_metadata.xml
Contact
Lophelia_raw_data.zip(14682)
Description Zip file containing raw data (.fna, .qual, .sff) and MIMARKS metadata.
Format .fna, .qual, .sff
Amount 2.6 GB
Digital location \\gs\stpetersburgfl-g\Ecosystem_and_Environmental_Studies\Archive\Publications\DR_F7M32SXM
Supported? No
Public? Yes
Reviewed? Yes
Process? No
Public URL https://doi.org/10.5066/F7M32SXM
Metadata https://cmgds.marine.usgs.gov/metadata/spcmsc/Cold_water_coral_microbiomes_Lophelia_pertusa_from_Gulf_of_Mexico_and_Atlantic_Ocean_raw_data.xml
Contact

Description and usage history of this equipment

Publications

Samples collected during this field activity

Similar field activities carried out by this science center