Biological Occurrence

Biological Occurrence data identify different taxa together with the times and locations in which these particular organisms live. Distributions for these data subject types record observations of identifiable taxa at known times and places on the basis of captured samples, imagery, genetic testing, or other methods. Distributions also include single-taxon modeling approaches such as habitat suitability index models or essential fish habitat models; interpretations based on empirical correlations; population change models; connectivity estimates; or evaluations of migratory pathways and spawning grounds. Assessment types include spatially applicable indices for identifying and valuing regional taxa; classifications of species (for example, as harvested, protected, or invasive) as a function of location and time; evaluations of organism condition; assessments of stressor or disturbance effects on taxa, assemblages and communities; evaluations of ecological value of species (for example, keystone species, nonredundant species); taxon-based ecological services models; and place-based indices of susceptibility and vulnerability to disturbance. Predictions include evaluations of future impacts, distributions, and ecological or economic effects due to single or multiple stressors and other projected changes, as well as scenario-testing models of taxon losses/gains under different management options, usually combined with projections of related ecological or economic effects.
Subtopics:
Fishes (2 items)
Flora (3 items)
Invertebrates (20 items)
Mammals (1 items)

32 results listed alphabetically [list by similarity]
Acoustic-backscatter data from three locations in the Sacramento-San Joaquin Delta, California, 2017 to 2018

This part of the data release contains high-resolution acoustic-backscatter data collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three study locations in the Sacramento-San Joaquin Delta, California. Data were collected in Lindsey Slough in April 2017, Middle River in March 2018, and Mokelumne River in March 2018, using an interferometric bathymetric sidescan sonar systems mounted to the USGS R/V Parke Snavely. Data are provided in 1-m resolution GeoTIFF formats. ...

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Aquatic invertebrate abundance in the Elwha River estuary, Washington, in 2007 and 2013

This portion of the data release presents aquatic invertebrate abundance data from samples collected in the Elwha River estuary, Washington, in 2007 and 2013 (no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). Replicate benthic samples were collected at 18 locations throughout the estuary complex using a petite Ponar grab sampler (appx. 2400 mL sample) and sorted through a 500-micron sieve. Samples were fixed in 10 percent ...

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Census counts of benthic foraminifera, environmental parameters (temperature, salinity, and oxygen concentration), and radiocarbon measurements from cores obtained under and near a whale-fall off western Vancouver Island, British Columbia, Canada

This data release provides census counts of benthic foraminifera (in percent for the total fauna and as raw counts for just the living specimens) as well as environmental parameters (temperature, salinity, and oxygen concentration) at the sampling sites, and radiocarbon measurements from selected push core samples obtained under and near a whale-fall off western Vancouver Island, British Columbia, Canada.

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Census counts of benthic foraminifera from core 721-1 obtained in 2002 off San Francisquito Creek in South San Francisco Bay

This data release provides census counts of benthic foraminifera in sediments of a core obtained off San Francisquito Creek in South San Francisco Bay.

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Census counts of diatoms from core 721-1 obtained in 2002 off San Francisquito Creek in South San Francisco Bay

This data release provides census counts of diatoms in sediments of a core obtained off San Francisquito Creek in South San Francisco Bay.

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Census counts of the non-indigenous benthic foraminifera Trochammina hadai Uchio obtained in 1983-2010 in San Francisco Bay, California

This data release provides census counts of the non-indigenous benthic foraminifera Trochammina hadai Uchio in surface sediment samples obtained in San San Francisco Bay, California from 1983-2010.

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CMECS geoform, CMECS substrate, and surficial geology offshore of Arcata, California

This substrate, geomorphic, and geologic attributed polygon shapefile in the Offshore of Arcata, California, map area is part of USGS Data Series 781 (Golden and Cochrane, 2019). The map area is one of 83 map areas of the California State Waters Map Series. The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of Cape Mendocino

This shapefile has substrate, geomorphic, and geologic attributed polygons in the Offshore of Cape Mendocino, California, map area, one of 83 map areas of the California State Waters Map Series, USGS Data Series 781 (Golden, 2019). The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification Standard (CMECS; Federal ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of Eureka, California

This substrate, geomorphic, and geologic attributed polygon shapefile in the Offshore of Eureka, California, map area is part of USGS Data Series 781 (Golden and Cochrane, 2019). The map area is one of 83 map areas of the California State Waters Map Series. The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of Morro Bay (ver. 1.1, January 2024)

This part of USGS Data Series 781 presents substrate, geomorphic, and geologic attributed polygons in the Offshore of Morro Bay, California, map area, one of 83 map areas of the California State Waters Map Series. The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification Standard (CMECS; Federal Geographic Data ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of Point Buchon (ver. 1.1, January 2024)

This shapefile has substrate, geomorphic, and geologic attributed polygons in the Offshore of Point Buchon, California, map area, one of 83 map areas of the California State Waters Map Series, USGS Data Series 781 (Golden and Cochrane, 2019). The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification Standard (CMECS; ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of Point Estero (ver. 1.1, November 2023)

This substrate, geomorphic, and geologic attributed polygon shapefile in the Offshore of Eureka, California, map area is part of USGS Data Series 781 (Golden and Cochrane, 2019). The map area is one of 83 map areas of the California State Waters Map Series. The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification ...

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CMECS geoform, CMECS substrate, and surficial geology offshore of the Eel River

This part of USGS Data Series 781 presents substrate, geomorphic, and geologic attributed polygons in the Offshore of the Eel River, California, map area, one of 83 map areas of the California State Waters Map Series. The polygons are derived from multibeam echosounder (MBES) data and derivatives of that data using video-supervised and unsupervised classification. Attributes and attribute values are named following the Coastal and Marine Ecological Classification Standard (CMECS; Federal Geographic Data ...

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CMECS geoform, substrate, and biotopes offshore of Burien, Washington

This part of USGS Data Series 935 (Cochrane, 2014) presents substrate, geomorphic, and biotope data in the Offshore of Burien, Washington, map area, a part of the Southern Salish Sea Habitat Map Series. Given the variable bathymetric resolution, the complex geologic history of the region, and the lack of acoustic backscatter data, automated and semi-automated classification schemes of classifying seafloor substrate and geoform were deemed to have very low accuracy. Instead, classification of these ...

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CMECS geoform, substrate, and biotopes offshore of Seattle, Washington

This part of USGS Data Series 935 (Cochrane, 2014) presents substrate, geomorphic, and biotope data in the Offshore of Seattle, California, map area, a part of the Southern Salish Sea Habitat Map Series. Given the variable bathymetric resolution, the complex geologic history of the region, and the lack of acoustic backscatter data, automated and semi-automated classification schemes of classifying seafloor substrate and geoform were deemed to have very low accuracy. Instead, classification of these ...

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CMECS geoform, substrate, and biotopes offshore of Tacoma, Washington

This part of USGS Data Series 935 (Cochrane, 2014) presents substrate, geomorphic, and biotope data in the Offshore of Tacoma, Washington, map area, a part of the Southern Salish Sea Habitat Map Series. Given the variable bathymetric resolution, the complex geologic history of the region, and the lack of acoustic backscatter data, automated and semi-automated classification schemes of classifying seafloor substrate and geoform were deemed to have very low accuracy. Instead, classification of these ...

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CMECS substrate, geoform, and biotic component polygons derived from multibeam echosounder data and underwater video observations collected offshore of south-central California in support of the Bureau of Ocean Energy Management Cal DIG I, offshore alternative energy project

These metadata describe Coastal and Marine Ecological Classification Standard (CMECS; Federal Geographic Data Committee, 2012) attributed polygons derived from multibeam echosounder acoustic bathymetry and backscatter intensity data, and from underwater video collected offshore of Morro Bay, California from 2016 to 2020. The polygons have CMECS substrate, geoform and biotic component attributes. Most of the data were collected in support of the U.S. Geological Survey (USGS)/Bureau of Ocean Energy Management ...

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Diet of Chinook and coho salmon in the Elwha River estuary, Washington, before and during dam removal

This portion of the data release presents fish diet data from Chinook and coho salmon collected in the Elwha River estuary, Washington, in 2006, 2007, 2013, and 2014 (there are no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). Fish were collected using a beach seine at six locations throughout the estuary. Fish were transferred to buckets containing aerated ambient water and kept cool until handling. We anesthetized fish ...

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Eelgrass distributions derived from a towed underwater video survey of the Nisqually River delta, 2012

This portion of the USGS data release presents eelgrass distributions derived from towed underwater video surveys of the Nisqually River delta, Washington in 2012 (USGS Field Activity Number D-01-12-PS). Eelgrass data were collected from the R/V George Davidson equipped with a towed underwater video system and global navigation satellite system (GNSS) receiver. The underwater video system consisted of a Splashcam standard definition video camera connected to a Sony GV-D1000 video monitor and tape recorder. ...

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Eelgrass distributions derived from a towed underwater video survey of the Nisqually River delta, 2014

This portion of the USGS data release presents eelgrass distributions derived from towed underwater video surveys of the Nisqually River delta, Washington in 2014 (USGS Field Activity Number D-01-14-PS). Eelgrass data were collected from the R/V George Davidson equipped with a towed underwater video system and global navigation satellite system (GNSS) receiver. The underwater video system consisted of a Splashcam standard definition video camera connected to a Sony GV-D1000 video monitor and tape recorder. ...

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Eelgrass distributions derived from a towed underwater video survey of the Nisqually River delta, 2017

This portion of the USGS data release presents eelgrass distributions derived from towed underwater video surveys of the Nisqually River delta, Washington in 2017 (USGS Field Activity Number 2017-614-FA). Eelgrass data were collected from the R/V George Davidson equipped with a towed underwater video system and global navigation satellite system (GNSS) receiver. The underwater video system consisted of a Splashcam standard definition video camera connected to a Sony GV-D1000 video monitor and tape recorder. ...

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Fish abundance in the Elwha River estuary, Washington, from 2006 to 2014

This portion of the data release presents fish abundance data from samples collected in the Elwha River estuary, Washington, in 2006, 2007, 2013, and 2014 (no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). We used the Puget Sound beach seining protocol (Simenstad and others, 1991) to sample fish populations in the Elwha River estuary complex. The beach seine was 38 m long x 2 m deep, with a 2 m x 2 m bag in the center of ...

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Hydrodynamic time-series data from three locations in the Sacramento-San Joaquin Delta, California, 2017 to 2018

Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018. Data files are grouped by location. At each of the three sites, data were collected at stations outside and within patches ...

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Invertebrate remains from the Dominican University of California archaeological site MRN-CA-254, Marin County, California

This data release indicates faunal presence or absence of shelly artifacts (invertebrate remains) from the Dominican University of California archaeological site MRN-CA-254, Marin County, California.

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Mammal Observations-Oregon OCS Floating Wind Farm Site

This part of the Oregon OCS Data Release presents marine mammal observations from U.S. Geological Survey (USGS) field activity 2014-607-FA in the Oregon Outer continental Shelf (OCS)Floating Wind Farm survey area. The survey was conducted using 12 hour day operations out of Charleston Harbor near Coos Bay, Oregon. The cruise plan consisted of 23 days on site split between sonar mapping and video ground truth surveying. Activities parsed out to nine days of sonar mapping, three days of video surveying, eight ...

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Physical, environmental, and biotic observations derived from underwater video collected offshore of south-central California in support of the Bureau of Ocean Energy Management Cal DIG I offshore alternative energy project

Physical, environmental, and biotic observations were derived from underwater video collected by the Monterey Bay Aquarium Research Institute (MBARI) using remotely operated vehicles (ROVs) offshore of Morro Bay, California. The data were acquired during three separate surveys in 2019 in support of the U.S. Geological Survey (USGS)/Bureau of Ocean Energy Management (BOEM) California Deepwater Investigations and Groundtruthing I (Cal DIG I) project. Transect information developed to analyze the data for ...

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Still-image frame grabs and benthic habitat interpretation of underwater video footage, March 2014, Faga`alu Bay, American Samoa

Underwater video was collected in March 2014 in the nearshore waters of Faga`alu Bay on the island of Tutuila, American Samoa, as part of the U.S. Geological Survey Coastal and Marine Geology Program's Pacific Coral Reefs Project. This dataset includes 2,119 still images extracted from the video footage every 10 seconds and an Environmental Systems Research Institute (ESRI) shapefile of individual still-image locations with benthic habitat interpretations for each image.

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Suspended particle size distribution data from three locations in the Sacramento-San Joaquin Delta, California, 2017 to 2018

These data present suspended particle size distributions collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough on April 4 and April 18, 2017, and near the mouth of the Mokelumne River and in Middle River on March 14, 2018 by deploying a Sequoia Scientific Laser In-situ Scattering and Transmissometry instrument (LISST 100x) from a small vessel during the deployment of the ...

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Swath bathymetric data from three locations in the Sacramento-San Joaquin Delta, California, 2017 to 2018

This part of the data release contains high-resolution swath bathymetry data collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, Middle River in March 2018, and Mokelumne River in March 2018 using an interferometric bathymetric sidescan sonar systems mounted to the USGS R/V Parke Snavely. Data are provided in 1-m resolution GeoTIFF formats. These data were ...

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Terrestrial invertebrate abundance in the Elwha River estuary, Washington, in 2007 and 2013.

This portion of the data release presents terrestrial invertebrate abundance data from samples collected in emergent and shrub vegetation along the edge of the Elwha River estuary, Washington, in 2007 and 2013 (no associated USGS Field Activities numbers because data were collected predominantly by biologists from the Lower Elwha Klallam Tribe). We deployed terrestrial insect fallout traps at ten locations in the east estuary, five replicates each in shrub and emergent (littoral) vegetation habitats. Clear, ...

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Underwater video footage, March 2014, Faga'alu Bay, Tutuila Island, American Samoa

Underwater video imagery was collected in March 2014 in the nearshore waters of Faga'alu Bay on the Island of Tutuila, American Samoa, as part of the U.S. Geological Survey Coastal and Marine Geology Program's Pacific Coral Reefs Project. Included here are 40 video files in .mpg format and an Environmental Systems Research Institute (ESRI) shapefile with location (navigation) points every two seconds.

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Vegetation biomass and density from three locations in the Sacramento-San Joaquin Delta, California, 2017 to 2018

Vegetation type and density data were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018. Vegetation samples were collected by divers, and used to determine dry biomass density. These data were collected as part of a cooperative project, with the USGS California Water Science Center and the California ...

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